Nucleic Acids Research (NAR) - Texas A&M University (TAMU) Scholar

publication venue for

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.. gkad616. 2023
Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6.. gkad453. 2023
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing.. 51:D744-D752. 2023
Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs.. 50:e48-e48. 2022
Chemically targeting the redox switch in AP1 transcription factor FOSB.. 50:9548-9567. 2022
Optical control of protein delivery and partitioning in the nucleolus.. 50:e69-e69. 2022
Designed architectural proteins that tune DNA looping in bacteria.. 49:10382-10396. 2021
Arabidopsis retains vertebrate-type telomerase accessory proteins via a plant-specific assembly.. 49:9496-9507. 2021
Preferential CEBP binding to T:G mismatches and increased C-to-T human somatic mutations.. 49:5084-5094. 2021
Xenogeneic silencing relies on temperature-dependent phosphorylation of the host H-NS protein in Shewanella.. 49:3427-3440. 2021
Kinetics of heterochiral strand displacement from PNA-DNA heteroduplexes.. 49:6114-6127. 2021
Reversible chromatin condensation by the DNA repair and demethylation factor thymine DNA glycosylase.. 49:2450-2459. 2021
The Gene Ontology resource: enriching a GOld mine.. 49:D325-D334. 2021
Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations.. 48:12593-12603. 2020
Estrogen-induced transcription at individual alleles is independent of receptor level and active conformation but can be modulated by coactivators activity.. 48:1800-1810. 2020
In vitro selection of l-DNA aptamers that bind a structured d-RNA molecule. 48:1669-1680. 2020
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data.. 48:D561-D569. 2020
Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor.. 47:9934-9949. 2019
Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.. 47:8375-8387. 2019
eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons.. 47:9243-9258. 2019
The Gene Sculpt Suite: a set of tools for genome editing.. 47:W175-W182. 2019
Structural basis for effects of CpA modifications on C/EBP binding of DNA.. 47:1774-1785. 2019
The Gene Ontology Resource: 20 years and still GOing strong.. 47:D330-D338. 2019
BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site.. 47:253-265. 2019
Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis.. 46:e76-e76. 2018
Bacterial gene control by DNA looping using engineered dimeric transcription activator like effector (TALE) proteins.. 46:2690-2696. 2018
Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC.. 46:2883-2900. 2018
Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis.. 45:10884-10894. 2017
A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement.. 45:9481-9502. 2017
Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome.. 45:e97-e97. 2017
Statistical analysis of genetic interactions in Tn-Seq data.. 45:e93-e93. 2017
Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae.. 45:3985-3996. 2017
Expansion of the Gene Ontology knowledgebase and resources.. 45:D331-D338. 2017
Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.. 44:e147. 2016
Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation.. 44:9821-9830. 2016
Evoking picomolar binding in RNA by a single phosphorodithioate linkage.. 44:8052-8064. 2016
RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling.. 44:D254-D258. 2016
The hub protein loquacious connects the microRNA and short interfering RNA pathways in mosquitoes.. 43:3688-3700. 2015
Gene Ontology Consortium: going forward.. 43:D1049-D1056. 2015
RalR (a DNase) and RalA (a small RNA) form a type I toxin-antitoxin system in Escherichia coli.. 42:6448-6462. 2014
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools (vol 42, pg D677, 2014). 42:12330-12330. 2014
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.. 42:D677-D684. 2014
Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan.. 42:1245-1256. 2014
Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly.. 41:3805-3818. 2013
Gene Ontology annotations and resources.. 41:D530-D535. 2013
Chimeric piggyBac transposases for genomic targeting in human cells.. 40:6978-6991. 2012
Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5.. 40:2898-2906. 2012
Crucial elements that maintain the interactions between the regulatory TnaC peptide and the ribosome exit tunnel responsible for Trp inhibition of ribosome function.. 40:2247-2257. 2012
EcoliWiki: a wiki-based community resource for Escherichia coli.. 40:D1270-D1277. 2012
GONUTS: the Gene Ontology Normal Usage Tracking System.. 40:D1262-D1269. 2012
The Gene Ontology: enhancements for 2011.. 40:D559-D564. 2012
zfishbook: connecting you to a world of zebrafish revertible mutants.. 40:D907-D911. 2012
PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences.. 39:W8-12. 2011
Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate.. 39:1565-1575. 2011
PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.. 38:4917-4928. 2010
The Gene Ontology in 2010: extensions and refinements.. 38:D331-D335. 2010
POT1 proteins in green algae and land plants: DNA-binding properties and evidence of co-evolution with telomeric DNA.. 37:7455-7467. 2009
Passport, a native Tc1 transposon from flatfish, is functionally active in vertebrate cells.. 37:1239-1247. 2009
Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues.. 37:463-472. 2009
Telomere dynamics and fusion of critically shortened telomeres in plants lacking DNA ligase IV.. 35:6490-6500. 2007
Rpm2p, a protein subunit of mitochondrial RNase P, physically and genetically interacts with cytoplasmic processing bodies.. 35:1301-1311. 2007
Deletion of the Tetrahymena thermophila rDNA replication fork barrier region disrupts macronuclear rDNA excision and creates a fragile site in the micronuclear genome.. 34:620-634. 2006
The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max.. 34:D758-D765. 2006
Minimal pre-mRNA substrates with natural and converted sites for full-round U insertion and U deletion RNA editing in trypanosomes.. 33:6610-6620. 2005
A highly sensitive selection method for directed evolution of homing endonucleases. 33:e154-e154. 2005
Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum. 33:e50-e50. 2005
Empirical evaluation of data transformations and ranking statistics for microarray analysis.. 32:5471-5479. 2004
High efficiency, site-specific excision of a marker gene by the phage P1 cre-loxP system in the yellow fever mosquito, Aedes aegypti.. 31:e147-147. 2003
Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies.. 31:2344-2352. 2003
Oligomerization of the telomerase reverse transcriptase from Euplotes crassus.. 30:4032-4039. 2002
Discrete promoter elements affect specific properties of RNA polymerase II transcription complexes. 28:2726-2735. 2000
Three different proteins recognize a multifunctional determinant that controls replication initiation, fork arrest and transcription in Tetrahymena.. 28:843-851. 2000
Identification of an essential proximal sequence element in the promoter of the telomerase RNA gene of Tetrahymena thermophila.. 27:4269-4275. 1999
Long range cooperative interactions regulate the initiation of replication in the Tetrahymena thermophila rDNA minichromosome.. 27:3079-3089. 1999
Packaging of DNA by shell crosslinked nanoparticles.. 27:2966-2971. 1999
An allylic/acyclic adenosine nucleoside triphosphate for termination of DNA synthesis by DNA template-dependent polymerases.. 27:1271-1274. 1999
Cloning and stable maintenance of DNA fragments over 300 kb in Escherichia coli with conventional plasmid-based vectors.. 26:4901-4909. 1998
Molecular cloning of a cDNA encoding human SPH-binding factor, a conserved protein that binds to the enhancer-like region of the U6 small nuclear RNA gene promoter.. 26:4846-4852. 1998
Conserved cis- and trans-acting determinants for replication initiation and regulation of replication fork movement in tetrahymenid species.. 26:4635-4644. 1998
Reiterative dG addition by Euplotes crassus telomerase during extension of non-telomeric DNA.. 26:3998-4004. 1998
Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized.. 26:3634-3639. 1998
Functional and physical interactions between the estrogen receptor Sp1 and nuclear aryl hydrocarbon receptor complexes.. 26:3044-3052. 1998
The distal elements, OCT and SPH, stimulate the formation of preinitiation complexes on a human U6 snRNA gene promoter in vitro.. 26:1536-1543. 1998
Test of the potential of a dATP surrogate for sequencing via MALDI-MS.. 25:5072-5076. 1997
Expression of herpes virus thymidine kinase in Neurospora crassa.. 25:2389-2395. 1997
DNA damage by peroxynitrite characterized with DNA repair enzymes.. 24:4105-4110. 1996
Stability of an inverted repeat in a human fibrosarcoma cell.. 24:4234-4241. 1996
A rapid RT-PCR method for detection of intact RNA in formalin-fixed paraffin-embedded tissues.. 23:3071-3072. 1995
Interaction of dimeric intercalating dyes with single-stranded DNA. 23:1215-1222. 1995
Termination of DNA synthesis by novel 3'-modified-deoxyribonucleoside 5'-triphosphates.. 22:4259-4267. 1994
A rapid and simple PCR-based method for isolation of cDNAs from differentially expressed genes.. 22:4009-4015. 1994
In vivo transcription of a progesterone-responsive gene is specifically inhibited by a triplex-forming oligonucleotide.. 21:2789-2796. 1993
The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates.. 21:1111-1115. 1993
Functional redundancy of octamer elements in the mouse mammary tumor virus promoter. 21:5235-5241. 1993
Disulfide bonds are required for Serratia marcescens nuclease activity.. 20:4971-4974. 1992
The transcriptional start site for a human U6 small nuclear RNA gene is dictated by a compound promoter element consisting of the PSE and the TATA box.. 20:4903-4912. 1992
Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications. 20:2803-2812. 1992
G to A polymorphism in exon 45 of the COL1A1 gene.. 19:4302-4302. 1991
PCR detection of a HindIII polymorphism in the human gene for type II procollagen (COL2A1).. 19:4571-4571. 1991
C to T polymorphism in exon 33 of the COL3A1 gene.. 19:681-681. 1991
High-sensitivity two-color detection of double-stranded DNA with a confocal fluorescence gel scanner using ethidium homodimer and thiazole orange. 19:327-333. 1991
U-3'-BCIP: a chromogenic substrate for the detection of RNase A in recombinant DNA expression systems.. 19:1-4. 1991
Genomic analysis of the major bovine milk protein genes.. 18:6935-6942. 1990
Nuclease mapping and DNA sequence analysis of transcripts from the dihydrofolate reductase-thymidylate synthase (R) region of Leishmania major.. 18:6399-6408. 1990
G to A polymorphism in exon 31 of the COL3A1 gene.. 18:6180-6180. 1990
Nucleotide sequence of a cDNA encoding the vacuolar protein strictosidine synthase from Catharanthus roseus.. 18:4939-4939. 1990
A sequence polymorphism in the 3'-nontranslated region of the pro alpha 1 chain of type I procollagen.. 18:4968-4968. 1990
Detection of single-base mutations by reaction of DNA heteroduplexes with a water-soluble carbodiimide followed by primer extension: application to products from the polymerase chain reaction.. 18:3933-3939. 1990
INTRON MOBILITY IN PHAGE-T4 IS DEPENDENT UPON A DISTINCTIVE CLASS OF ENDONUCLEASES AND INDEPENDENT OF DNA-SEQUENCES ENCODING THE INTRON CORE - MECHANISTIC AND EVOLUTIONARY IMPLICATIONS. 18:3763-3770. 1990
Sequence and molecular structure of the Aspergillus nidulans yA (laccase I) gene.. 18:3415-3415. 1990
DNA sequence of satellite bacteriophage P4.. 18:1649-1649. 1990
Transcription of a human U6 small nuclear RNA gene in vivo withstands deletion of intragenic sequences but not of an upstream TATATA box.. 17:7371-7379. 1989
A new ultracentrifugation technique for analysis and isolation of polysomes. 17:4896-4896. 1989
THE INCONSISTENT DISTRIBUTION OF INTRONS IN THE T-EVEN PHAGES INDICATES RECENT GENETIC EXCHANGES. 17:301-315. 1989
Sequence and transcript map of barley chloroplast psbA gene.. 16:8184. 1988
Sequence and transcript map of barley chloroplast psbA gene.. 16:8184-8184. 1988
A Sephadex column procedure for DNA isolation is also useful for detecting dsRNA.. 16:776-776. 1988
Characterization of the effects on ovalbumin mRNA of aminomethyl-trimethylpsoralen photoreaction with hen oviduct mRNA.. 15:8417-8438. 1987
Sequence of figwort mosaic virus DNA (caulimovirus group).. 15:8451-8466. 1987
A HindIII polymorphism in the 3' end of the human alpha 1(IV) collagen gene.. 15:5497-5497. 1987
Characterization of the barley chloroplast transcription units containing psaA-psaB and psbD-psbC.. 15:5217-5240. 1987
Sequence and S1 nuclease mapping of the 5' region of the dihydrofolate reductase-thymidylate synthase gene of Leishmania major.. 15:3369-3383. 1987
The two classes of genes for the major potato tuber protein, patatin, are differentially expressed in tubers and roots.. 15:1979-1994. 1987
Transcriptional repression of a hormone-responsive promoter. 15:6973-6989. 1987
A simple and efficient enzymatic method for covalent attachment of DNA to cellulose. Application for hybridization-restriction analysis and for in vitro synthesis of DNA probes.. 14:9171-9191. 1986
Sequence of two apparent pseudogenes of the major potato tuber protein, patatin.. 14:5564-5566. 1986
An in vitro system for accurate transcription initiation of chloroplast protein genes.. 13:1283-1302. 1985
Isolation and sequence analysis of cDNAs for the major potato tuber protein, patatin.. 12:7987-8000. 1984
Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.. 9:6869-6888. 1981
Histone-DNA interactions within chromatin. Isolation of histones from DNA-histone adducts induced in nuclei by UV light.. 5:4263-4272. 1978
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.. 47:D1186-D1194.
KREH2 helicase represses ND7 mRNA editing in procyclic-stage Trypanosoma brucei by opposite modulation of canonical and 'moonlighting' gRNA utilization creating a proposed mRNA structure.. gkae699.

Nucleic Acids Research (NAR) Journal

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