Nucleic Acids Research Journal

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Overview

publication venue for

• Click display: a rapid and efficient in vitro protein display method for directed evolution..  gkad643. 2023
• JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom..  gkad616. 2023
• An amber-encoding helper phage for more efficient phage display of noncanonical amino acids..  gkad488. 2023
• Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6..  gkad453. 2023
• MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing..  51:D744-D752. 2023
• Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs..  50:e48-e48. 2022
• Chemically targeting the redox switch in AP1 transcription factor FOSB..  50:9548-9567. 2022
• Optical control of protein delivery and partitioning in the nucleolus..  50:e69-e69. 2022
• Arabidopsis retains vertebrate-type telomerase accessory proteins via a plant-specific assembly..  49:9496-9507. 2021
• Preferential CEBP binding to T:G mismatches and increased C-to-T human somatic mutations..  49:5084-5094. 2021
• Xenogeneic silencing relies on temperature-dependent phosphorylation of the host H-NS protein in Shewanella..  49:3427-3440. 2021
• Kinetics of heterochiral strand displacement from PNA-DNA heteroduplexes..  49:6114-6127. 2021
• Reversible chromatin condensation by the DNA repair and demethylation factor thymine DNA glycosylase..  49:2450-2459. 2021
• The Gene Ontology resource: enriching a GOld mine..  49:D325-D334. 2021
• Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations..  48:12593-12603. 2020
• Estrogen-induced transcription at individual alleles is independent of receptor level and active conformation but can be modulated by coactivators activity..  48:1800-1810. 2020
• In vitro selection of l-DNA aptamers that bind a structured d-RNA molecule.  48:1669-1680. 2020
• MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data..  48:D561-D569. 2020
• Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor..  47:9934-9949. 2019
• Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine..  47:8375-8387. 2019
• eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons..  47:9243-9258. 2019
• Structural basis for effects of CpA modifications on C/EBP binding of DNA..  47:1774-1785. 2019
• The Gene Ontology Resource: 20 years and still GOing strong..  47:D330-D338. 2019
• BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site..  47:253-265. 2019
• Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis..  46:e76-e76. 2018
• Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC..  46:2883-2900. 2018
• Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis..  45:10884-10894. 2017
• A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement..  45:9481-9502. 2017
• Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome..  45:e97-e97. 2017
• Statistical analysis of genetic interactions in Tn-Seq data..  45:e93-e93. 2017
• Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae..  45:3985-3996. 2017
• Expansion of the Gene Ontology knowledgebase and resources..  45:D331-D338. 2017
• Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation..  44:9821-9830. 2016
• Evoking picomolar binding in RNA by a single phosphorodithioate linkage..  44:8052-8064. 2016
• RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling..  44:D254-D258. 2016
• The hub protein loquacious connects the microRNA and short interfering RNA pathways in mosquitoes..  43:3688-3700. 2015
• Gene Ontology Consortium: going forward..  43:D1049-D1056. 2015
• RalR (a DNase) and RalA (a small RNA) form a type I toxin-antitoxin system in Escherichia coli..  42:6448-6462. 2014
• PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools (vol 42, pg D677, 2014).  42:12330-12330. 2014
• PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools..  42:D677-D684. 2014
• Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan..  42:1245-1256. 2014
• Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly..  41:3805-3818. 2013
• Gene Ontology annotations and resources..  41:D530-D535. 2013
• Chimeric piggyBac transposases for genomic targeting in human cells..  40:6978-6991. 2012
• Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5..  40:2898-2906. 2012
• Crucial elements that maintain the interactions between the regulatory TnaC peptide and the ribosome exit tunnel responsible for Trp inhibition of ribosome function..  40:2247-2257. 2012
• EcoliWiki: a wiki-based community resource for Escherichia coli..  40:D1270-D1277. 2012
• GONUTS: the Gene Ontology Normal Usage Tracking System..  40:D1262-D1269. 2012
• The Gene Ontology: enhancements for 2011..  40:D559-D564. 2012
• PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences..  39:W8-12. 2011
• Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate..  39:1565-1575. 2011
• PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences..  38:4917-4928. 2010
• The Gene Ontology in 2010: extensions and refinements..  38:D331-D335. 2010
• POT1 proteins in green algae and land plants: DNA-binding properties and evidence of co-evolution with telomeric DNA..  37:7455-7467. 2009
• Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues..  37:463-472. 2009
• Telomere dynamics and fusion of critically shortened telomeres in plants lacking DNA ligase IV..  35:6490-6500. 2007
• Rpm2p, a protein subunit of mitochondrial RNase P, physically and genetically interacts with cytoplasmic processing bodies..  35:1301-1311. 2007
• Deletion of the Tetrahymena thermophila rDNA replication fork barrier region disrupts macronuclear rDNA excision and creates a fragile site in the micronuclear genome..  34:620-634. 2006
• The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max..  34:D758-D765. 2006
• Minimal pre-mRNA substrates with natural and converted sites for full-round U insertion and U deletion RNA editing in trypanosomes..  33:6610-6620. 2005
• A highly sensitive selection method for directed evolution of homing endonucleases.  33:e154-e154. 2005
• Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum.  33:e50-e50. 2005
• Empirical evaluation of data transformations and ranking statistics for microarray analysis..  32:5471-5479. 2004
• High efficiency, site-specific excision of a marker gene by the phage P1 cre-loxP system in the yellow fever mosquito, Aedes aegypti..  31:e147-147. 2003
• Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies..  31:2344-2352. 2003
• Oligomerization of the telomerase reverse transcriptase from Euplotes crassus..  30:4032-4039. 2002
• Discrete promoter elements affect specific properties of RNA polymerase II transcription complexes.  28:2726-2735. 2000
• Three different proteins recognize a multifunctional determinant that controls replication initiation, fork arrest and transcription in Tetrahymena..  28:843-851. 2000
• Identification of an essential proximal sequence element in the promoter of the telomerase RNA gene of Tetrahymena thermophila..  27:4269-4275. 1999
• Long range cooperative interactions regulate the initiation of replication in the Tetrahymena thermophila rDNA minichromosome..  27:3079-3089. 1999
• Packaging of DNA by shell crosslinked nanoparticles..  27:2966-2971. 1999
• An allylic/acyclic adenosine nucleoside triphosphate for termination of DNA synthesis by DNA template-dependent polymerases..  27:1271-1274. 1999
• Cloning and stable maintenance of DNA fragments over 300 kb in Escherichia coli with conventional plasmid-based vectors..  26:4901-4909. 1998
• Molecular cloning of a cDNA encoding human SPH-binding factor, a conserved protein that binds to the enhancer-like region of the U6 small nuclear RNA gene promoter..  26:4846-4852. 1998
• Conserved cis- and trans-acting determinants for replication initiation and regulation of replication fork movement in tetrahymenid species..  26:4635-4644. 1998
• Reiterative dG addition by Euplotes crassus telomerase during extension of non-telomeric DNA..  26:3998-4004. 1998
• Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized..  26:3634-3639. 1998
• Functional and physical interactions between the estrogen receptor Sp1 and nuclear aryl hydrocarbon receptor complexes..  26:3044-3052. 1998
• The distal elements, OCT and SPH, stimulate the formation of preinitiation complexes on a human U6 snRNA gene promoter in vitro..  26:1536-1543. 1998
• Test of the potential of a dATP surrogate for sequencing via MALDI-MS..  25:5072-5076. 1997
• Expression of herpes virus thymidine kinase in Neurospora crassa..  25:2389-2395. 1997
• DNA damage by peroxynitrite characterized with DNA repair enzymes..  24:4105-4110. 1996
• Stability of an inverted repeat in a human fibrosarcoma cell..  24:4234-4241. 1996
• A rapid RT-PCR method for detection of intact RNA in formalin-fixed paraffin-embedded tissues..  23:3071-3072. 1995
• Interaction of dimeric intercalating dyes with single-stranded DNA.  23:1215-1222. 1995
• Termination of DNA synthesis by novel 3'-modified-deoxyribonucleoside 5'-triphosphates..  22:4259-4267. 1994
• A rapid and simple PCR-based method for isolation of cDNAs from differentially expressed genes..  22:4009-4015. 1994
• In vivo transcription of a progesterone-responsive gene is specifically inhibited by a triplex-forming oligonucleotide..  21:2789-2796. 1993
• The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates..  21:1111-1115. 1993
• Functional redundancy of octamer elements in the mouse mammary tumor virus promoter.  21:5235-5241. 1993
• Disulfide bonds are required for Serratia marcescens nuclease activity..  20:4971-4974. 1992
• The transcriptional start site for a human U6 small nuclear RNA gene is dictated by a compound promoter element consisting of the PSE and the TATA box..  20:4903-4912. 1992
• Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications.  20:2803-2812. 1992
• A to G polymorphism in ELN gene..  19:4314-4314. 1991
• G to A polymorphism in exon 45 of the COL1A1 gene..  19:4302-4302. 1991
• PCR detection of a HindIII polymorphism in the human gene for type II procollagen (COL2A1)..  19:4571-4571. 1991
• C to T polymorphism in exon 33 of the COL3A1 gene..  19:681-681. 1991
• High-sensitivity two-color detection of double-stranded DNA with a confocal fluorescence gel scanner using ethidium homodimer and thiazole orange.  19:327-333. 1991
• U-3'-BCIP: a chromogenic substrate for the detection of RNase A in recombinant DNA expression systems..  19:1-4. 1991
• Genomic analysis of the major bovine milk protein genes..  18:6935-6942. 1990
• Nuclease mapping and DNA sequence analysis of transcripts from the dihydrofolate reductase-thymidylate synthase (R) region of Leishmania major..  18:6399-6408. 1990
• G to A polymorphism in exon 31 of the COL3A1 gene..  18:6180-6180. 1990
• PvuII polymorphism at the COL1A2 locus..  18:5577-5577. 1990
• Nucleotide sequence of a cDNA encoding the vacuolar protein strictosidine synthase from Catharanthus roseus..  18:4939-4939. 1990
• A sequence polymorphism in the 3'-nontranslated region of the pro alpha 1 chain of type I procollagen..  18:4968-4968. 1990
• Detection of single-base mutations by reaction of DNA heteroduplexes with a water-soluble carbodiimide followed by primer extension: application to products from the polymerase chain reaction..  18:3933-3939. 1990
• INTRON MOBILITY IN PHAGE-T4 IS DEPENDENT UPON A DISTINCTIVE CLASS OF ENDONUCLEASES AND INDEPENDENT OF DNA-SEQUENCES ENCODING THE INTRON CORE - MECHANISTIC AND EVOLUTIONARY IMPLICATIONS.  18:3763-3770. 1990
• Sequence and molecular structure of the Aspergillus nidulans yA (laccase I) gene..  18:3415-3415. 1990
• DNA sequence of satellite bacteriophage P4..  18:1649-1649. 1990
• Transcription of a human U6 small nuclear RNA gene in vivo withstands deletion of intragenic sequences but not of an upstream TATATA box..  17:7371-7379. 1989
• A new ultracentrifugation technique for analysis and isolation of polysomes.  17:4896-4896. 1989
• THE INCONSISTENT DISTRIBUTION OF INTRONS IN THE T-EVEN PHAGES INDICATES RECENT GENETIC EXCHANGES.  17:301-315. 1989
• Sequence and transcript map of barley chloroplast psbA gene..  16:8184. 1988
• Sequence and transcript map of barley chloroplast psbA gene..  16:8184-8184. 1988
• A Sephadex column procedure for DNA isolation is also useful for detecting dsRNA..  16:776-776. 1988
• Characterization of the effects on ovalbumin mRNA of aminomethyl-trimethylpsoralen photoreaction with hen oviduct mRNA..  15:8417-8438. 1987
• Sequence of figwort mosaic virus DNA (caulimovirus group)..  15:8451-8466. 1987
• A HindIII polymorphism in the 3' end of the human alpha 1(IV) collagen gene..  15:5497-5497. 1987
• Characterization of the barley chloroplast transcription units containing psaA-psaB and psbD-psbC..  15:5217-5240. 1987
• Sequence and S1 nuclease mapping of the 5' region of the dihydrofolate reductase-thymidylate synthase gene of Leishmania major..  15:3369-3383. 1987
• The two classes of genes for the major potato tuber protein, patatin, are differentially expressed in tubers and roots..  15:1979-1994. 1987
• Transcriptional repression of a hormone-responsive promoter.  15:6973-6989. 1987
• A simple and efficient enzymatic method for covalent attachment of DNA to cellulose. Application for hybridization-restriction analysis and for in vitro synthesis of DNA probes..  14:9171-9191. 1986
• Sequence of two apparent pseudogenes of the major potato tuber protein, patatin..  14:5564-5566. 1986
• An in vitro system for accurate transcription initiation of chloroplast protein genes..  13:1283-1302. 1985
• Isolation and sequence analysis of cDNAs for the major potato tuber protein, patatin..  12:7987-8000. 1984
• Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA..  9:6869-6888. 1981
• Histone-DNA interactions within chromatin. Isolation of histones from DNA-histone adducts induced in nuclei by UV light..  5:4263-4272. 1978
• ECO, the Evidence & Conclusion Ontology: community standard for evidence information..  47:D1186-D1194.

Identity

International Standard Serial Number (ISSN)

• 0305-1048