publication venue for
- Bayesian Multivariate Poisson Model for RNA-Seq Classification 2013
- Boolean Model to Experimental Validation: A Preliminary Attempt 2013
- Designing Experiments for Optimal Reduction of Uncertainty in Gene Regulatory Networks 2013
- Drug Effect Study on Proliferation and Survival Pathways on Cell Line-Based Platform: A Stochastic Hybrid Systems Approach 2013
- Effect of Mixing Probabilities on the Bias of Cross-Validation Under Separate Sampling 2013
- Effect of Separate Sampling on Classification and the Minimax Criterion 2013
- Exploiting the Cancer and Diabetes Metabolic Connection for Therapeutic Purposes 2013
- Improved Branch-and-Bound Algorithm for U-Curve Optimization 2013
- On the Modeling of Heterogeneity in Cancer Tissue 2013
- Optimal Bayesian MMSE Estimation of the Coefficient of Determination for Discrete Prediction 2013
- Phenotypically Constrained Boolean Network Inference with Prescribed Steady States 2013
- ROBNCA: Robust Network Component Analysis for Recovering Transcription Factor Activities 2013
- Supersonic MiB 2013
- Modeling Hypoxia Stress Response Pathways 2013
- A NEW PHENOTYPICALLY CONSTRAINED CONTROL POLICY IN BOOLEAN NETWORKS BASED ON BASINS OF ATTRACTION 2012
- A Statistical Test for Intrinsically Multivariate Predictive Genes 2012
- Determining Gene Function in Boolean Networks using Boolean Satisfiability 2012
- Determining the relative prevalence of different subpopulations in heterogeneous cancer tissue 2012
- FEATURE RANKING BASED ON SYNERGY NETWORKS TO IDENTIFY PROGNOSTIC MARKERS IN DPT-1 2012
- Fast DNA Barcode Generating Algorithm Using Radix Coding Method 2012
- Finding Robust Pathway Markers for Cancer Classification 2012
- Hierarchical Bayesian Methods for Integration of Various Types of Genomics Data 2012
- Logistic Principal Component Analysis for Rare Variants in Gene-Environment Interaction Analysis 2012
- MiB: A Comparative Assembly Processing Pipeline 2012
- Network-Based Methods to Identify Highly Discriminating Subsets of Biomarkers 2012
- OBGene: Optimal Barcode Generator for NGS Experiments 2012
- Optimal Bayesian Classification and Its Application to Gene Regulatory Networks 2012
- Optimal Therapeutic Methods with Random-Length Response in Probabilistic Boolean Networks 2012
- A Cubature Kalman Filter Approach for Inferring Gene Regulatory Networks Using Time Series Data 2011
- Application of Survival Analysis Methodology to the Quantitative Analysis of LC-MS Proteomics Data 2011
- Assessing the Efficacy of Molecularly Targeted Agents by Using Kalman Filter 2011
- Classifier Error Estimator Performance in a Bayesian Context 2011
- Designing Enhanced Classifiers Using Prior Process Knowledge: Regularized Maximum-Likelihood 2011
- Efficient cancer therapy using Boolean networks and Max-SAT-based ATPG 2011
- Efficient combinatorial drug optimization through stochastic search 2011
- Finding effective subnetwork markers for cancer by passing messages 2011
- Identifying Genes Associated with Chemotherapy Response in Ovarian Carcinomas Based on DNA Copy Number and Expression Profiles 2011
- Minimum Description Length Based Selection of Reference Sequences for Comparative Assemblers 2011
- Modeling Cyclic and Acyclic Therapeutic Methods with Persistent Intervention Effect in Probabilistic Boolean Networks 2011
- Modeling and systematic analysis of LC-MS proteomics pipeline 2011
- Modelling oxidative stress response pathways 2011
- Multiple Reaction Monitoring: Modeling and Systematic Analysis 2011
- Pathway Analysis in the Context of Bayesian Networks – Mathematical Modeling of Master and Canalizing Genes 2011
- Probabilistic consistency transformation for multiple alignment of biological networks 2011
- Relationship between the accuracy of classifier error estimation and distribution complexity 2011
- Sample-based estimators for the instrinsically multivariate prediction score 2011
- Stochastic Modeling of Dynamic Effects of Copy Number Alterations upon Gene Expression Levels 2011
- Studying the possibility of peaking phenomenon in linear support vector machines with non-separable data 2011
- UNCERTAINTY-BASED ESSENTIALITY IN GENE REGULATORY NETWORKS 2011
- A COMPARATIVE STUDY ON SENSITIVITIES OF BOOLEAN NETWORKS 2010
- APPROXIMATE EXPRESSIONS FOR THE VARIANCES OF NON-RANDOMIZED ERROR ESTIMATORS AND COD ESTIMATORS FOR THE DISCRETE HISTOGRAM RULE 2010
- BAYESIAN MMSE ESTIMATION OF CLASSIFICATION ERROR AND PERFORMANCE ON REAL GENOMIC DATA 2010
- CONDITIONING-BASED MODEL FOR THE REGULATORY ACTIVITIES OF microRNAs IN SPECIFIC DIETARY CONTEXTS 2010
- EFFECTS OF PARTIAL REPORTING OF CLASSIFICATION RESULTS 2010
- GRAPHLET ALIGNMENT IN PROTEIN INTERACTION NETWORKS 2010
- Inference of Gene Predictor Set Using Boolean Satisfiability 2010
- RMS BOUNDS AND SAMPLE SIZE CONSIDERATIONS FOR ERROR ESTIMATION IN LINEAR DISCRIMINANT ANALYSIS 2010
- BAGGING DEGRADES THE PERFORMANCE OF LINEAR DISCRIMINANT CLASSIFIERS 2009
- BOLSTERED ERROR ESTIMATOR WITH FEATURE SELECTION 2009
- CONTROL-COMPATIBLE STATE REDUCTION FOR BOOLEAN NETWORKS 2009
- OPEN-LOOP FEEDBACK INTERVENTION: CONTROL OF GENE REGULATORY NETWORKS WITH UNMEASURABLE CONTEXT 2009
- QUANTIFICATION OF DATA EXTRACTION NOISE IN PROBABILISTIC BOOLEAN NETWORK MODELING 2009
- SAMPLE SIZE CALCULATION FROM SPECIFIED RMS OF THE RESUBSTITUTION ERROR FOR LINEAR CLASSIFIERS 2009
- A CRITERION FOR CHOOSING BETWEEN FULL-SAMPLE AND HOLD-OUT CLASSIFIER DESIGN 2008
- AN ASYMPTOTICALLY-EXACT EXPRESSION FOR THE VARIANCE OF CLASSIFICATION ERROR FOR THE DISCRETE HISTOGRAM RULE 2008
- Analytic Formulation of Optimal Structural Intervention Strategies in Boolean Networks 2008
- COMPARISON OF ROBUST STRATEGIES FOR THE CONTROL OF GENE REGULATORY NETWORKS 2008
- CONSTRAINED INTERVENTION IN A CANCEROUS MAMMALIAN CELL CYCLE NETWORK 2008
- FEATURE SELECTION IN THE CLASSIFICATION OF HIGH-DIMENSION DATA 2008
- MODELING CYCLIC THERAPY IN GENE REGULATORY NETWORKS 2008
- Network properties of intrinsically multivariate predictive genes 2008
- PRELIMINARY STUDY ON BOLSTERED ERROR ESTIMATION IN HIGH-DIMENSIONAL SPACES 2008
- Bidirectional Relationships and Attractor Structure of Boolean Networks 2007
- Effect of Parameter Variations on the Inference of Contextsensitive Probabilistic Boolean Networks 2007
- Recovering Genetic Regulatory Networks by Integrating Multiple Data Sources 2007
- Robustness of Intervention Strategies for Probabilistic Boolean Networks 2007
- Accuracy of differential expression detection with compressed microarray images 2006
- Altering Steady-State Probabilities in Probabilistic Boolean Networks 2006
- Classification of Quantized Small Sample Data 2006
- Conditional Confidence Intervals for fhe True Classification Error 2006
- Control in a Family of Boolean Networks 2006
- Effect of Normalization on Microarray-Based Classification 2006
- Feature Selection Increases Cross-Validation Imprecision 2006
- Information Theoretic Inference of Direct Gene Regulation from Time Series Data 2006
- Reducing the Complexity of a PBN while Preserving its Dynamical Structure 2006
- Synthesizing Boolean Networks with a Given Attractor Structure 2006
- Temporal Inference of Probabilistic Boolean Networks 2006
- What Can We Expect from High-Dimensional Feature Selection 2006