publication venue for
- Boolean Model to Experimental Validation: A Preliminary Attempt 2013
- Designing experiments for optimal reduction of uncertainty in gene regulatory networks 2013
- Drug effect study on proliferation and survival pathways on cell line-based platform: A stochastic hybrid systems approach 2013
- Effect of mixing probabilities on the bias of cross-validation under separate sampling 2013
- Effect of separate sampling on classification and the minimax criterion 2013
- Exploiting the Cancer and Diabetes Metabolic Connection for Therapeutic Purposes 2013
- Improved branch-and-bound algorithm for U-curve optimization 2013
- On The Modeling of Heterogeneity in Cancer Tissue 2013
- Optimal Bayesian MMSE estimation of the coefficient of determination for discrete prediction 2013
- Phenotypically constrained Boolean network inference with prescribed steady states 2013
- Modeling Hypoxia Stress Response Pathways 2013
- Bayesian Multivariate Poisson Model for RNA-Seq Classification 2013
- ROBNCA: Robust Network Component Analysis for Recovering Transcription Factor Activities 2013
- Supersonic MiB 2013
- A new phenotypically constrained control policy in boolean networks based on basins of attraction 2012
- A statistical test for intrinsically multivariate predictive genes 2012
- Determining gene function in boolean networks using boolean satisfiability 2012
- Determining the relative prevalence of different subpopulations in heterogeneous cancer tissue 2012
- Fast DNA Barcode Generating Algorithm Using Radix Coding Method 2012
- Feature ranking based on synergy networks to identify prognostic markers in DPT-1 2012
- Finding robust pathway markers for cancer classification 2012
- Hierarchical Bayesian methods for integration of various types of genomics data 2012
- Logistic principal component analysis for rare variants in gene-environment interaction analysis 2012
- Network-based methods to identify highly discriminating subsets of biomarkers 2012
- OBGene: Optimal Barcode Generator for NGS Experiments 2012
- Optimal Bayesian classification and its application to gene regulatory networks 2012
- Optimal Therapeutic Methods with Random-Length Response in Probabilistic Boolean Networks 2012
- MiB: A Comparative Assembly Processing Pipeline 2012
- Assessing the efficacy of molecularly targeted agents by using Kalman filter 2011
- Classifier error estimator performance in a Bayesian context 2011
- Designing enhanced classifiers using prior process knowledge: Regularized maximum-likelihood 2011
- Efficient cancer therapy using Boolean networks and Max-SAT-based ATPG 2011
- Efficient combinatorial drug optimization through stochastic search 2011
- Finding effective subnetwork markers for cancer by passing messages 2011
- Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles 2011
- Minimum description length based selection of reference sequences for comparative assemblers 2011
- Modeling Cyclic and Acyclic Therapeutic Methods with Persistent Intervention Effect in Probabilistic Boolean Networks 2011
- Modeling and systematic analysis of LC-MS proteomics pipeline 2011
- Modelling Oxidative Stress Response Pathways 2011
- Multiple reaction monitoring: Modeling and systematic analysis 2011
- Probabilistic consistency transformation for multiple alignment of biological networks 2011
- Relationship between the accuracy of classifier error estimation and distribution complexity 2011
- Sample-based estimators for the instrinsically multivariate prediction score 2011
- Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels 2011
- Studying the possibility of peaking phenomenon in linear support vector machines with non-separable data 2011
- Uncertainty-based essentiality in gene regulatory networks 2011
- A Cubature Kalman Filter Approach for Inferring Gene Regulatory Networks Using Time Series Data 2011
- Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data 2011
- Pathway Analysis in the Context of Bayesian Networks Mathematical Modeling of Master and Canalizing Genes 2011
- A comparative study on sensitivities of Boolean networks 2010
- Approximate expressions for the variances of non-randomized error estimators and CoD estimators for the discrete histogram rule 2010
- Bayesian MMSE estimation of classification error and performance on real genomic data 2010
- Effects of partial reporting of classification results 2010
- Graphlet alignment in protein interaction networks 2010
- Inference of gene predictor set using Boolean satisfiability 2010
- RMS bounds and sample size considerations for error estimation in linear discriminant analysis 2010
- CONDITIONING-BASED MODEL FOR THE REGULATORY ACTIVITIES OF microRNAs IN SPECIFIC DIETARY CONTEXTS 2010
- Bagging degrades the performance of linear discriminant classifiers 2009
- Bolstered error estimator with feature selection 2009
- Control-compatible state reduction for Boolean networks 2009
- OPEN-LOOP FEEDBACK INTERVENTION: CONTROL OF GENE REGULATORY NETWORKS WITH UNMEASURABLE CONTEXT 2009
- QUANTIFICATION OF DATA EXTRACTION NOISE IN PROBABILISTIC BOOLEAN NETWORK MODELING 2009
- Sample size calculation from specified RMS of the resubstitution error for linear classifiers 2009
- A criterion for choosing between full-sample and hold-out classifier design 2008
- An asymptotically-exact expression for the variance of classification error for the discrete histogram rule 2008
- Analytic formulation of optimal structural intervention strategies in Boolean Networks 2008
- Comparison of robust strategies for the control of gene regulatory networks 2008
- Constrained intervention in a cancerous mammalian cell cycle network 2008
- Feature selection in the classification of high-dimension data 2008
- Modeling cyclic therapy in gene regulatory networks 2008
- Network properties of intrinsically multivariate predictive genes 2008
- Preliminary study on bolstered error estimation in high-dimensional spaces 2008
- Effect of Parameter Variations on the Inference of Context-Sensitive Probabilistic Boolean Networks 2007
- Recovering Genetic Regulatory Networks by Integrating Multiple Data Sources 2007
- Robustness of intervention strategies for probabilistic Boolean networks 2007
- Bidirectional relationships and attractor structure of Boolean networks 2007
- Accuracy of differential expression detection with compressed microarray images 2006
- Altering steady-state probabilities in Probabilistic Boolean Networks 2006
- Classification of quantized small sample data 2006
- Conditional confidence intervals for the true classification error 2006
- Control in a family of Boolean networks 2006
- Effect of normalization on microarray-based classification 2006
- Feature selection increases cross-validation imprecision 2006
- Information theoretic inference of direct gene regulation from time series data 2006
- Synthesizing Boolean networks with a given attractor structure 2006
- Temporal inference of probabilistic Boolean networks 2006
- What can we expect from high-dimensional feature selection 2006
- Reducing the complexity of a PBN while preserving its dynamical structure 2006