HR job title
- Executive Associate Dean
- Contact Info
- 1 979 847 9325
- Websites
- ORCiD
- 0000-0002-5704-1052
Klein, Patricia Professor
Positions
- Executive Associate Dean, College of Agriculture and Life Sciences
- Professor, Horticultural Sciences, College of Agriculture and Life Sciences
Dr. Klein's research focuses on developing the genomic tools and resources in crops to enable map base cloning of economically important genes, and to understand the underlying mechanisms that plants use to withstand biotic and abiotic stress. Dr. Klein conducts genetic studies on several plant species including sorghum, rose, and pecan. In 2012, Dr. Klein was awarded the College of Agriculture and Life Sciences Dean's Outstanding Achievement Award for excellence as a member of the Sorghum Bioenergy Breeding and Genomics Interdisciplinary Research Team.
- Overview
- Publications
- Research
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Overview
Publications
selected publications
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academic article
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Crozier, D., Winans, N. D., Hoffmann, L., Patil, N. Y., Klein, P. E., Klein, R. R., & Rooney, W. L.
(2024).
Evaluating and Predicting the Performance of Sorghum Lines in an Elite by Exotic Backcross-Nested Association Mapping Population. Plants.
13(6), 879-879.
-
Kent, M. A., Fonseca, J., Klein, P. E., Klein, R. R., Hayes, C. M., & Rooney, W. L.
(2023).
Use of genomic prediction to screen sorghum B-lines in hybrid testcrosses. Plant Genome.
e20369.
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Winans, N. D., Klein, R. R., Fonseca, J., Klein, P. E., & Rooney, W. L.
(2023).
Evaluating Introgression Sorghum Germplasm Selected at the Population Level While Exploring Genomic Resources as a Screening Method. Plants.
12(3), 444-444.
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Kent, M. A., Fonseca, J., Klein, P. E., Klein, R. R., Hayes, C. M., & Rooney, W. L.
(2023).
Assessing the agronomic potential of sorghum B-lines using genomic prediction. Crop Science.
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Fonseca, J., Perumal, R., Klein, P. E., Klein, R. R., & Rooney, W. L.
(2022).
Mega-environment analysis to assess adaptability, stability, and genomic predictions in grain sorghum hybrids. Euphytica.
218(9), 128.
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Borrell, A. K., Wong, A., George-Jaeggli, B., van Oosterom, E. J., Mace, E. S., Godwin, I. D., ... Jordan, D. R.
(2022).
Genetic modification of PIN genes induces causal mechanisms of stay-green drought adaptation phenotype. Journal of Experimental Botany.
73(19), 6711-6726.
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Young, E. L., Lau, J., Bentley, N. B., Rawandoozi, Z., Collins, S., Windham, M. T., ... Riera-Lizarazu, O.
(2022).
Identification of QTLs for Reduced Susceptibility to Rose Rosette Disease in Diploid Roses. Pathogens.
11(6), 660-660.
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Lau, J., Young, E. L., Collins, S., Windham, M. T., Klein, P. E., Byrne, D. H., & Riera-Lizarazu, O.
(2022).
Rose Rosette Disease Resistance Loci Detected in Two Interconnected Tetraploid Garden Rose Populations. Frontiers in Plant Science.
13, 916231.
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Fonseca, J., Klein, P. E., Crossa, J., Pacheco, A., Perez-Rodriguez, P., Ramasamy, P., Klein, R., & Rooney, W. L.
(2021).
Assessing combining abilities, genomic data, and genotype environment interactions to predict hybrid grain sorghum performance. Plant Genome.
14(3), e20127.
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Fonseca, J., Perumal, R., Klein, P. E., Klein, R. R., & Rooney, W. L.
(2021).
Combining abilities and elite germplasm enhancement across US public sorghum breeding programs. Crop Science.
61(6), 4098-4111.
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Lovell, J. T., Bentley, N. B., Bhattarai, G., Jenkins, J. W., Sreedasyam, A., Alarcon, Y., ... Randall, J. J.
(2021).
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. Nature Communications.
12(1), 4125.
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Bentley, N., Grauke, L. J., Ruhlman, E., Klein, R. R., Kubenka, K., Wang, X., & Klein, P.
(2020).
Linkage mapping and QTL analysis of pecan (Carya illinoinensis) full-siblings using genotyping-by-sequencing. 16(6), 83.
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Crozier, D., Hoffmann, L. J., Klein, P. E., Klein, R. R., & Rooney, W. L.
(2020).
Predicting heterosis in grain sorghum hybrids using sequence-based genetic similarity estimates. Journal of Crop Improvement.
34(5), 600-617.
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Fedenia, L., Klein, R. R., Dykes, L., Rooney, W. L., & Klein, P. E.
(2020).
Phenotypic, Phytochemical, and Transcriptomic Analysis of Black Sorghum (Sorghum bicolor L.) Pericarp in Response to Light Quality. Journal of Agricultural and Food Chemistry.
68(37), 9917-9929.
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Horne, D. W., Patil, N. Y., Klein, R. R., Miller, F. R., Hoffmann, L. J., Klein, P. E., & Rooney, W. L.
(2020).
Registration of 11 diverse sorghum germplasm lines for grain and silage hybrid production. Journal of Plant Registrations.
14(2), 179-188.
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Scalabrin, S., Toniutti, L., Di Gaspero, G., Scaglione, D., Magris, G., Vidotto, M., ... Bertrand, B.
(2020).
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm. Scientific Reports.
10(1), 4642.
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de Oliveira, R. R., Ribeiro, T., Cardon, C. H., Fedenia, L., Maia, V. A., Barbosa, B., ... Chalfun-Junior, A.
(2020).
Elevated Temperatures Impose Transcriptional Constraints and Elicit Intraspecific Differences Between Coffee Genotypes. Frontiers in Plant Science.
11, 1113.
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Yan, M., Byrne, D. H., Klein, P. E., van de Weg, W. E., Yang, J., & Cai, L.
(2019).
Black spot partial resistance in diploid roses: QTL discovery and linkage map creation. Acta Horticulturae.
1232(1232), 135-141.
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Bentley, N., Grauke, L. J., & Klein, P.
(2019).
Genotyping by sequencing (GBS) and SNP marker analysis of diverse accessions of pecan (Carya illinoinensis). Tree Genetics and Genomes.
15(1), 8.
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Lau, J., Liang, S., Wu, X., Yan, M., Klein, P. E., Young, E. L., & Byrne, D. H.
(2019).
Heritability of flower size and heat stress in diploid roses. Acta Horticulturae.
1232(1232), 51-55.
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Young, E. L., Wu, X., Liang, S., Yan, M., Klein, P. E., & Byrne, D. H.
(2019).
Heritability of plant architecture in diploid roses. Acta Horticulturae.
1232(1232), 15-18.
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Kang, S., Yan, M., Roundey, E., Lau, J., Pemberton, H. B., Bishop, C., ... Byrne, D. H.
(2019).
Resistance of garden roses to cercospora leaf spot. Acta Horticulturae.
1232(1232), 221-226.
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Patil, N. Y., Pugh, N. A., Klein, R. R., Martinez, H. S., Martinez, R. S., Rodriguez-Herrera, R., Rooney, W. L., & Klein, P. E.
(2019).
Heritability and quantitative trait loci of composition and structural characteristics in sorghum grain. Journal of Crop Improvement.
33(1), 1-24.
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Echeverra-Beirute, F., Murray, S. C., Bertrand, B., & Klein, P. E.
(2019).
Candidate genes in coffee ( Coffea arabica L.) leaves associated with rust ( Hemileia vastatrix Berk. & Br) stress. 7, e27923v1.
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Yan, M., Byrne, D. H., Klein, P. E., Yang, J., Dong, Q., & Anderson, N.
(2018).
Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map. 5(1), 17.
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Anderson, S. L., Mahan, A. L., Murray, S. C., & Klein, P. E.
(2018).
Four Parent Maize (FPM) Population: Effects of Mating Designs on Linkage Disequilibrium and Mapping Quantitative Traits. Plant Genome.
11(2), 170102-170102.
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Byrne, D. H., Klein, P., Yan, M., Young, E., Lau, J., Ong, K., ... Novick, D.
(2018).
Challenges of Breeding Rose Rosette-resistant Roses. Hortscience.
53(5), 604-608.
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Mahan, A. L., Murray, S. C., & Klein, P. E.
(2018).
Four-Parent Maize (FPM) Population: Development and Phenotypic Characterization. Crop Science.
58(3), 1106-1117.
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Echeverria-Beirute, F., Murray, S. C., Klein, P., Kerth, C., Miller, R., & Bertrand, B.
(2018).
Rust and Thinning Management Effect on Cup Quality and Plant Performance for Two Cultivars of Coffea arabica L. Journal of Agricultural and Food Chemistry.
66(21), 5281-5292.
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Pugh, N. A., Rodriguez-Herrera, R., Klein, R. R., Klein, P. E., & Rooney, W. L.
(2017).
Identification of Quantitative Trait Loci for Popping Traits and Kernel Characteristics in Sorghum Grain. Crop Science.
57(4), 1999-2006.
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Turco, G. M., Kajala, K., Kunde-Ramamoorthy, G., Ngan, C., Olson, A., Deshphande, S., ... Brady, S. M.
(2017).
DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor. New Phytologist.
214(3), 1213-1229.
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Patil, N. Y., Klein, R. R., Williams, C. L., Collins, S. D., Knoll, J. E., Burrell, A. M., ... Klein, P. E.
(2017).
Quantitative Trait Loci Associated with Anthracnose Resistance in Sorghum. Crop Science.
57(2), 877-890.
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Grauke, L. J., Mendoza-Herrera, M. A., Stelly, D. M., & Klein, P. E.
(2016).
'Jones hybrid' hickory: a case study in Carya curation. SpringerPlus.
5(1), 1860.
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Adeyanju, A., Yu, J., Little, C., Rooney, W., Klein, P., Burke, J., & Tesso, T.
(2016).
Sorghum RILs Segregating for Stay-Green QTL and Leaf Dhurrin Content Show Differential Reaction to Stalk Rot Diseases. Crop Science.
56(6), 2895-2903.
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Upadhyaya, H. D., Wang, Y., Sastry, D., Dwivedi, S. L., Prasad, P., Burrell, A. M., ... Klein, P. E.
(2016).
Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions. Genome.
59(2), 137-145.
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Overholt, W. A., Hidayat, P., Le Ru, B., Takasu, K., Goolsby, J. A., Racelis, A., ... Cuda, J. P.
(2016).
Potential biological control agents for management of cogongrass (Cyperales: Poaceae) in the southeastern USA. Florida Entomologist: an international journal for the Americas.
99(4), 734-739.
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Klein, R. R., Miller, F. R., Bean, S., & Klein, P. E.
(2016).
Registration of 40 Converted Germplasm Sources from the Reinstated Sorghum Conversion Program. Journal of Plant Registrations.
10(1), 57-61.
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Burrell, A. M., Pepper, A. E., Hodnett, G., Goolsby, J. A., Overholt, W. A., Racelis, A. E., Diaz, R., & Klein, P. E.
(2015).
Exploring origins, invasion history and genetic diversity of Imperata cylindrica (L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing. Molecular Ecology.
24(9), 2177-2193.
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Burrell, A. M., Sharma, A., Patil, N. Y., Collins, S. D., Anderson, W. F., Rooney, W. L., & Klein, P. E.
(2015).
Sequencing of an Anthracnose-Resistant Sorghum Genotype and Mapping of a Major QTL Reveal Strong Candidate Genes for Anthracnose Resistance. Crop Science.
55(2), 790-799.
-
Klein, R. R., Miller, F. R., Dugas, D. V., Brown, P. J., Burrell, A. M., & Klein, P. E.
(2015).
Allelic variants in the PRR37 gene and the human-mediated dispersal and diversification of sorghum. Theoretical and Applied Genetics.
128(9), 1669-1683.
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Borrell, A. K., Mullet, J. E., George-Jaeggli, B., van Oosterom, E. J., Hammer, G. L., Klein, P. E., & Jordan, D. R.
(2014).
Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake. Journal of Experimental Botany.
65(21), 6251-6263.
-
Gill, J. R., Rooney, W. L., & Klein, P. E.
(2014).
Effect of humidity on intergeneric pollinations of iap (Inhibition of Alien Pollen) sorghum [Sorghum bicolor (L.) Moench]. Euphytica.
198(3), 381-387.
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Yang, S., Murphy, R. L., Morishige, D. T., Klein, P. E., Rooney, W. L., & Mullet, J. E.
(2014).
Sorghum phytochrome B inhibits flowering in long days by activating expression of SbPRR37 and SbGHD7, repressors of SbEHD1, SbCN8 and SbCN12. PLoS ONE.
9(8), e105352-e105352.
-
Borrell, A. K., van Oosterom, E. J., Mullet, J. E., George-Jaeggli, B., Jordan, D. R., Klein, P. E., & Hammer, G. L.
(2014).
Stay-green alleles individually enhance grain yield in sorghum under drought by modifying canopy development and water uptake patterns. New Phytologist.
203(3), 817-830.
-
Olson, A., Klein, R. R., Dugas, D. V., Lu, Z., Regulski, M., Klein, P. E., & Ware, D.
(2014).
Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing. Plant Genome.
7(2),
-
Murphy, R. L., Morishige, D. T., Brady, J. A., Rooney, W. L., Yang, S., Klein, P. E., & Mullet, J. E.
(2014).
Ghd7 (Ma6) Represses Sorghum Flowering in Long Days: Ghd7 Alleles Enhance Biomass Accumulation and Grain Production. Plant Genome.
7(2),
-
Wang, Y., Acharya, A., Burrell, A. M., Klein, R. R., Klein, P. E., & Hasenstein, K. H.
(2013).
Mapping and candidate genes associated with saccharification yield in sorghum. Genome.
56(11), 659-665.
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Evans, J., McCormick, R. F., Morishige, D., Olson, S. N., Weers, B., Hilley, J., ... Mullet, J.
(2013).
Extensive variation in the density and distribution of DNA polymorphism in sorghum genomes. PLoS ONE.
8(11), e79192-e79192.
-
Klein, R. R., Miller, F. R., Klein, P. E., & Burke, J. J.
(2013).
Registration of Partially Converted Germplasm from 44 Accessions of the USDA-ARS Ethiopian and Sudanese Sorghum Collections. Journal of Plant Registrations.
7(3), 368-372.
-
Wang, Y., Upadhyaya, H. D., Burrell, A. M., Sahraeian, S., Klein, R. R., & Klein, P. E.
(2013).
Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor. G3: Genes, Genomes, Genetics.
3(5), 783-793.
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Morishige, D. T., Klein, P. E., Hilley, J. L., Sahraeian, S., Sharma, A., & Mullet, J. E.
(2013).
Digital genotyping of sorghum - a diverse plant species with a large repeat-rich genome. BMC GENOMICS.
14(1), 448.
-
Felderhoff, T. J., Murray, S. C., Klein, P. E., Sharma, A., Hamblin, M. T., Kresovich, S., Vermerris, W., & Rooney, W. L.
(2012).
QTLs for Energy-related Traits in a Sweet x Grain Sorghum [Sorghum bicolor (L.) Moench] Mapping Population. Crop Science.
52(5), 2040-2049.
-
Murphy, R. L., Klein, R. R., Morishige, D. T., Brady, J. A., Rooney, W. L., Miller, F. R., ... Mullet, J. E.
(2011).
Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum. Proceedings of the National Academy of Sciences of the United States of America.
108(39), 16469-16474.
-
O'Shea, B., Khare, S., Klein, P., Roussel, A., Adams, L. G., Ficht, T. A., & Rice-Ficht, A. C.
(2011).
Amplified fragment length polymorphism reveals specific epigenetic distinctions between Mycobacterium avium subspecies paratuberculosis isolates of various isolation types. Journal of Clinical Microbiology.
49(6), 2222-2229.
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Dugas, D. V., Monaco, M. K., Olsen, A., Klein, R. R., Kumari, S., Ware, D., & Klein, P. E.
(2011).
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid. BMC GENOMICS.
12(1), 514.
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Jordan, D. R., Klein, R. R., Sakrewski, K. G., Henzell, R. G., Klein, P. E., & Mace, E. S.
(2011).
Mapping and characterization of Rf 5: a new gene conditioning pollen fertility restoration in A1 and A2 cytoplasm in sorghum (Sorghum bicolor (L.) Moench). Theoretical and Applied Genetics.
123(3), 383-396.
-
Burow, G. B., Klein, R. R., Franks, C. D., Klein, P. E., Schertz, K. F., Pederson, G. A., Xin, Z., & Burke, J. J.
(2011).
Registration of the BTx623/IS3620C Recombinant Inbred Mapping Population of Sorghum. Journal of Plant Registrations.
5(1), 141-145.
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Chung, M., Vrebalov, J., Alba, R., Lee, J., McQuinn, R., Chung, J., Klein, P., & Giovannoni, J.
(2010).
A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening. 64(6), 936-947.
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Kuhlman, L. C., Burson, B. L., Stelly, D. M., Klein, P. E., Klein, R. R., Price, H. J., & Rooney, W. L.
(2010).
Early-generation germplasm introgression from Sorghum macrospermum into sorghum (S. bicolor). Genome.
53(6), 419-429.
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Jordan, D. R., Mace, E. S., Henzell, R. G., Klein, P. E., & Klein, R. R.
(2010).
Molecular mapping and candidate gene identification of the Rf2 gene for pollen fertility restoration in sorghum [Sorghum bicolor (L.) Moench]. Theoretical and Applied Genetics.
120(7), 1279-1287.
-
Perumal, R., Menz, M. A., Mehta, P. J., Katile, S., Gutierrez-Rojas, L. A., Klein, R. R., ... Magill, C. W.
(2009).
Molecular mapping of Cg1, a gene for resistance to anthracnose (Colletotrichum sublineolum) in sorghum. Euphytica.
165(3), 597-606.
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Mace, E. S., Rami, J., Bouchet, S., Klein, P. E., Klein, R. R., Kilian, A., ... Jordan, D. R.
(2009).
A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers. BMC Plant Biology.
9(1), 13-13.
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Paterson, A. H., Bowers, J. E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., ... Rokhsar, D. S.
(2009).
The Sorghum bicolor genome and the diversification of grasses. Nature.
457(7229), 551-556.
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Kuhlman, L. C., Burson, B. L., Klein, P. E., Klein, R. R., Stelly, D. M., Price, H. J., & Rooney, W. L.
(2008).
Genetic recombination in Sorghum bicolor x S. macrospermum interspecific hybrids. Genome.
51(9), 749-756.
-
Conner, J. A., Goel, S., Gunawan, G., Cordonnier-Pratt, M., Johnson, V. E., Liang, C., ... Ozias-Akins, P.
(2008).
Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus. PLANT PHYSIOLOGY.
147(3), 1396-1411.
-
Klein, R. R., Mullet, J. E., Jordan, D. R., Miller, F. R., Rooney, W. L., Menz, M. A., Franks, C. D., & Klein, P. E.
(2008).
The effect of tropical sorghum conversion and inbred development on genome diversity as revealed by high-resolution genotyping. Crop Science.
48(S1), S12-S26.
-
Murray, S. C., Sharma, A., Rooney, W. L., Klein, P. E., Mullet, J. E., Mitchell, S. E., & Kresovich, S.
(2008).
Genetic Improvement of Sorghum as a Biofuel Feedstock: I. QTL for Stem Sugar and Grain Nonstructural Carbohydrates. Crop Science.
48(6), 2165-2179.
-
Murray, S. C., Rooney, W. L., Mitchell, S. E., Sharma, A., Klein, P. E., Mullet, J. E., & Kresovich, S.
(2008).
Genetic Improvement of Sorghum as a Biofuel Feedstock: II. QTL for Stem and Leaf Structural Carbohydrates. Crop Science.
48(6), 2180-2193.
-
Yim, Y., Moak, P., Sanchez-Villeda, H., Musket, T. A., Close, P., Klein, P. E., ... Davis, G. L.
(2007).
A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps. BMC GENOMICS.
8(1), 47.
-
Magalhaes, J. V., Liu, J., Guimares, C. T., Lana, U., Alves, V., Wang, Y., ... Kochian, L. V.
(2007).
A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nature Genetics.
39(9), 1156-1161.
-
Nagy, E. D., Lee, T., Ramakrishna, W., Xu, Z., Klein, P. E., SanMiguel, P., ... Bennetzen, J. L.
(2007).
Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin. Theoretical and Applied Genetics.
114(6), 961-970.
-
Caniato, F. F., Guimares, C. T., Schaffert, R. E., Alves, V., Kochian, L. V., Borm, A., Klein, P. E., & Magalhaes, J. V.
(2007).
Genetic diversity for aluminum tolerance in sorghum. Theoretical and Applied Genetics.
114(5), 863-876.
-
Brown, P. J., Klein, P. E., Bortiri, E., Acharya, C. B., Rooney, W. L., & Kresovich, S.
(2006).
Inheritance of inflorescence architecture in sorghum. Theoretical and Applied Genetics.
113(5), 931-942.
-
Feltus, F. A., Hart, G. E., Schertz, K. F., Casa, A. M., Kresovich, S., Abraham, S., ... Paterson, A. H.
(2006).
Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations. Theoretical and Applied Genetics.
112(7), 1295-1305.
-
Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J., Stein, J., ... Jackson, S. A.
(2006).
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC GENOMICS.
7(1), 199.
-
Klein, R. R., Klein, P. E., Mullet, J. E., Minx, P., Rooney, W. L., & Schertz, K. F.
(2006).
Fertility restorer locus Rf1 of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12 (vol 111, pg 994, 2005). Theoretical and Applied Genetics.
112(2), 388-388.
-
Kim, J., Islam-Faridi, M. N., Klein, P. E., Stelly, D. M., Price, H. J., Klein, R. R., & Mullet, J. E.
(2005).
Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice. Genetics.
171(4), 1963-1976.
-
Sorghum Genomics Planning Workshop participants.
(2005).
Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report. PLANT PHYSIOLOGY.
138(4), 1898-1902.
-
Salzman, R. A., Brady, J. A., Finlayson, S. A., Buchanan, C. D., Summer, E. J., Sun, F., ... Mullet, J. E.
(2005).
Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses. PLANT PHYSIOLOGY.
138(1), 352-368.
-
Kim, J., Klein, P. E., Klein, R. R., Price, H. J., Mullet, J. E., & Stelly, D. M.
(2005).
Chromosome identification and nomenclature of Sorghum bicolor. Genetics.
169(2), 1169-1173.
-
Scherrer, B., Isidore, E., Klein, P., Kim, J., Bellec, A., Chalhoub, B., Keller, B., & Feuillet, C.
(2005).
Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome. The Plant Cell.
17(2), 361-374.
-
Kim, J., Klein, P. E., Klein, R. R., Price, H. J., Mullet, J. E., & Stelly, D. M.
(2005).
Molecular cytogenetic maps of sorghum linkage groups 2 and 8. Genetics.
169(2), 955-965.
-
Klein, R. R., Klein, P. E., Mullet, J. E., Minx, P., Rooney, W. L., & Schertz, K. F.
(2005).
Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12. Theoretical and Applied Genetics.
111(6), 994-1012.
-
Buchanan, C. D., Lim, S., Salzman, R. A., Kagiampakis, I., Morishige, D. T., Weers, B. D., ... Mullet, J. E.
(2005).
Sorghum bicolor's transcriptome response to dehydration, high salinity and ABA. Plant Molecular Biology: An International Journal on Molecular Biology, Molecular Genetics and Biochemistry.
58(5), 699-720.
-
Buchanan, C. D., Klein, P. E., & Mullet, J. E.
(2004).
Phylogenetic analysis of 5'-noncoding regions from the ABA-responsive rab16/17 gene family of sorghum, maize and rice provides insight into the composition, organization and function of cis-regulatory modules. Genetics.
168(3), 1639-1654.
-
O'Shea, B., Khare, S., Bliss, K., Klein, P., Ficht, T. A., Adams, L. G., & Rice-Ficht, A. C.
(2004).
Amplified fragment length polymorphism reveals genomic variability among Mycobacterium avium subsp. paratuberculosis isolates. Journal of Clinical Microbiology.
42(8), 3600-3606.
-
Magalhaes, J. V., Garvin, D. F., Wang, Y., Sorrells, M. E., Klein, P. E., Schaffert, R. E., Li, L. i., & Kochian, L. V.
(2004).
Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae. Genetics.
167(4), 1905-1914.
-
Menz, M. A., Klein, R. R., Unruh, N. C., Rooney, W. L., Klein, P. E., & Mullet, J. E.
(2004).
Genetic diversity of public inbreds of sorghum determined by mapped AFLP and SSR markers. Crop Science.
44(4), 1236-1244.
-
Klein, P. E., Klein, R. R., Vrebalov, J., & Mullet, J. E.
(2003).
Sequence-based alignment of sorghum chromosome 3 and rice chromosome 1 reveals extensive conservation of gene order and one major chromosomal rearrangement. The Plant Journal.
34(5), 605-621.
-
Zhu-Salzman, K., Li, H. W., Klein, P. E., Gorena, R. L., & Salzman, R. A.
(2003).
Using high-throughput amplified fragment length polymorphism to distinguish sorghum greenbug (Homoptera : Aphididae) biotypes. Agricultural and Forest Entomology.
5(4), 311-315.
-
Islam-Faridi, M. N., Childs, K. L., Klein, P. E., Hodnett, G., Menz, M. A., Klein, R. R., ... Price, H. J.
(2002).
A molecular cytogenetic map of sorghum chromosome 1. Fluorescence in situ hybridization analysis with mapped bacterial artificial chromosomes. Genetics.
161(1), 345-353.
-
Kim, J., Childs, K. L., Islam-Faridi, M. N., Menz, M. A., Klein, R. R., Klein, P. E., ... Stelly, D. M.
(2002).
Integrated karyotyping of sorghum by in situ hybridization of landed BACs. Genome.
45(2), 402-412.
-
Menz, M. A., Klein, R. R., Mullet, J. E., Obert, J. A., Unruh, N. C., & Klein, P. E.
(2002).
A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP and SSR markers. Plant Molecular Biology: An International Journal on Molecular Biology, Molecular Genetics and Biochemistry.
48(5-6), 483-499.
-
Wen, L., Tang, H. V., Chen, W., Chang, R., Pring, D. R., Klein, P. E., Childs, K. L., & Klein, R. R.
(2002).
Development and mapping of AFLP markers linked to the sorghum fertility restorer gene rf4. Theoretical and Applied Genetics.
104(4), 577-585.
-
Mullet, J. E., Klein, R. R., & Klein, P. E.
(2002).
Sorghum bicolor - an important species for comparative grass genomics and a source of beneficial genes for agriculture. Current Opinion in Plant Biology.
5(2), 118-121.
-
Childs, K. L., Klein, R. R., Klein, P. E., Morishige, D. T., & Mullet, J. E.
(2001).
Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology. The Plant Journal.
27(3), 243-255.
-
Klein, R. R., Rodriguez-Herrera, R., Schlueter, J. A., Klein, P. E., Yu, Z. H., & Rooney, W. L.
(2001).
Identification of genomic regions that affect grain-mould incidence and other traits of agronomic importance in sorghum. Theoretical and Applied Genetics.
102(2-3), 307-319.
-
Klein, R. R., Klein, P. E., Chhabra, A. K., Dong, J., Pammi, S., Childs, K. L., ... Schertz, K. F.
(2001).
Molecular mapping of the rf1 gene for pollen fertility restoration in sorghum (Sorghum bicolor L.). Theoretical and Applied Genetics.
102(8), 1206-1212.
-
Klein, P. E., Klein, R. R., Cartinhour, S. W., Ulanch, P. E., Dong, J., Obert, J. A., ... Mullet, J. E.
(2000).
A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Research.
10(6), 789-807.
-
Klein, R. R., Morishige, D. T., Klein, P. E., Dong, J. M., & Mullet, J. E.
(1998).
High throughput BAC DNA isolation for physical map construction of sorghum (Sorghum bicolor). Plant Molecular Biology Reporter.
16(4), 351-364.
-
Crozier, D., Winans, N. D., Hoffmann, L., Patil, N. Y., Klein, P. E., Klein, R. R., & Rooney, W. L.
(2024).
Evaluating and Predicting the Performance of Sorghum Lines in an Elite by Exotic Backcross-Nested Association Mapping Population. Plants.
13(6), 879-879.
-
conference paper
-
Byrne, D. H., Klein, P. E., Hall, C., Windham, M., Ochoa-Corona, F. M., Olson, J., ... Pemberton, H. B.
(2019).
Combating Rose rosette disease US national project. Acta Horticulturae.
203-212.
-
Grauke, L. J., Klein, R., Grusak, M. A., & Klein, P.
(2015).
The Forest and the Trees: Applications for Molecular Markers in the Repository and Pecan Breeding Program. Acta Horticulturae.
109-126.
-
Harris, K., Subudhi, P. K., Borrell, A., Jordan, D., Rosenow, D., Nguyen, H., ... Mullet, J.
(2007).
Sorghum stay-green QTL individually reduce post-flowering drought-induced leaf senescence. Journal of Experimental Botany.
327-338.
-
Byrne, D. H., Klein, P. E., Hall, C., Windham, M., Ochoa-Corona, F. M., Olson, J., ... Pemberton, H. B.
(2019).
Combating Rose rosette disease US national project. Acta Horticulturae.
203-212.
-
patent
-
Borrell, A. K., Jordan, D. R., Mullet, J., & Klein, P.
(2020).
Drought tolerant plants produced by modification of the stay-green STGX locus
-
Mullet, J., Rooney, W., Klein, P., Morishige, D., Murphy, R., & Brady, J.
(2012).
Discovery and utilization of sorghum genes (Ma5/Ma6)
-
Borrell, A. K., Jordan, D. R., Mullet, J., & Klein, P.
(2020).
Drought tolerant plants produced by modification of the stay-green STGX locus
Research
principal investigator on
- Development and Utilization of the Tools of Genomics and Genetics in Plants to Aid in Crop Improvement awarded by National Institute of Food and Agriculture - (Washington D.C., District of Columbia, United States) 2018 - 2023
- Coordinated Development of Genetic Tools for Pecan awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2016 - 2021
- Environmental and Genetic Control of Black pericarp Traits in Sorghum awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2019 - 2020
- Genomic Markers for Carya awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2015 - 2020
- Sequence-Based Genotyping, Bioinformatics, and Data Curation to Enhance Sorghum Germplasm Evaluation and Hybrid Development awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2014 - 2019
- Characterize Rf1-like Gene Expression in Sorghum Panicles awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2016 - 2017
- Development of Genetic and Genomic Resources for Carya awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2016 - 2017
- Use of Genetic and Genomic Tools in Sorghum to Characterize Gene Networks Associated with Bioenergy Traits awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2014 - 2017
- A Population-Genetic Inventory of the Invasive Weed, Imperta Cylindrica To Expedite the Development of Viable Biological awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2012 - 2016
- Developing Molecular Markers for CARYA awarded by Agricultural Research Service - (Washington D.C., District of Columbia, United States) 2011 - 2016
co-principal investigator on
- Towards Understanding and Mitigating Gene Flow Between Crop Sorghum (Sorghum bicolor) and Its Wild Relative Johnsongrass (S. halepense) awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2017 - 2021
- Combatting Rose Rosette Disease: Short and Long Term Approaches awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2014 - 2019
- Development and Validation of Genetic Analytical Tools for Polyploid Crop Plants awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2017 - 2018
Teaching
teaching activities
- GENE491 Hnr-research Instructor
- HORT301 Garden Science Instructor
- HORT491 Research Instructor
- HORT681 Seminar Instructor
- HORT684 Professional Internship: In-ab Instructor
- HORT690 Theory Research Instructor
- HORT691 Research Instructor
- HORT693 Professional Study Instructor
- MEPS691 Research Instructor
Works By Students
chaired theses and dissertations
-
Anderson, Jason C. (2011-08). Cytogenomic Analyses of the genus Sorghum.
-
Echeverria-Beirute, Fabian (2018-04). Plant Performance and Bean Quality of Coffee (Coffea arabica L.) under Rust (Hemileia vastatrix Berk. et Br.) Control and Fruit Thinning Treatments.
-
Kianifariz, Mahnaz (2017-04). Transcriptome Analysis during Stem Development and in the A1 Cytoplasmic Male Sterility System of Sorghum.
-
Patil, Nikhil Yuvaraj (2016-12). Investigating the Genetic Basis of Agronomically Important Traits in Sorghum.
-
Zhou, Bin (2009-05). Construction of a minimal tiling path across the euchromatic arms of sorghum chromosome 3 and comparative analysis with the rice chromosome 1 pseudomolecule.
Background
education and training
- Ph.D. in Biochemistry, Texas A&M University - (College Station, Texas, United States) 1989
Contact
first name
- Patricia
has last name
- Klein
mailing address
-
Texas A&M University
College of Agriculture and Life Sciences
2402 TAMU
College Station, TX 77843-2402
USA
Other
In the News
- pklein@tamu.edu