Applied and Environmental Microbiology Journal

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Overview

publication venue for

• Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone..  89:e0050023-e00523. 2023
• A Longitudinal Study on the Dynamics of Salmonella enterica Prevalence and Serovar Composition in Beef Cattle Feces and Lymph Nodes and Potential Contributing Sources from the Feedlot Environment..  89:e0003323-e00023. 2023
• Combined Quantification and Deep Serotyping for Salmonella Risk Profiling in Broiler Flocks..  89:e0203522-e02022. 2023
• MelibioseX-GalMacConkey Agar for Presumptive Differentiation of Escherichia albertii from E. coli and Salmonella from Poultry Meat.  3:119-130. 2023
• Microbial Community Dynamics Provide Evidence for Hypoxia during a Coral Reef Mortality Event..  88:e0034722-e00322. 2022
• Type IX Secretion System Effectors and Virulence of the Model Flavobacterium columnare Strain MS-FC-4..  88:e0170521-e01721. 2022
• Microbial Abundance and Diversity in Subsurface Lower Oceanic Crust at Atlantis Bank, Southwest Indian Ridge..  87:e0151921-e01521. 2021
• The Type IX Secretion System Is Required for Virulence of the Fish Pathogen Flavobacterium psychrophilum..  86:e00799-e00720. 2020
• Population Dynamics of Salmonella enterica within Beef Cattle Cohorts Followed from Single-Dose Metaphylactic Antibiotic Treatment until Slaughter..  85:e01386-e01319. 2019
• Bacillus thuringiensis Cry1Da_7 and Cry1B.868 Protein Interactions with Novel Receptors Allow Control of Resistant Fall Armyworms, Spodoptera frugiperda (J.E. Smith)..  85:e00579-e00519. 2019
• Metabolites Involved in Aerobic Degradation of the A and B Rings of Estrogen..  85:e02223-e02218. 2019
• Pseudomonas chlororaphis Produces Multiple R-Tailocin Particles That Broaden the Killing Spectrum and Contribute to Persistence in Rhizosphere Communities..  84:e01230-e01218. 2018
• Serotype Diversity and Antimicrobial Resistance among Salmonella enterica Isolates from Patients at an Equine Referral Hospital..  84:e02829-e02817. 2018
• Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments..  84:e01049-e01017. 2018
• Pseudomonas chlororaphis Produces Two Distinct R-Tailocins That Contribute to Bacterial Competition in Biofilms and on Roots..  83:e00706-e00717. 2017
• A Broad-Host-Range Tailocin from Burkholderia cenocepacia..  83:e03414-e03416. 2017
• Imaging of Borrelia turicatae Producing the Green Fluorescent Protein Reveals Persistent Colonization of the Ornithodoros turicata Midgut and Salivary Glands from Nymphal Acquisition through Transmission..  83:e02503-e02516. 2017
• The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil.  83. 2017
• Avian migrants facilitate invasions of neotropical ticks and tick-borne pathogens into the United States..  81:8366-8378. 2015
• New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph..  81:5927-5937. 2015
• Multifactorial effects of ambient temperature, precipitation, farm management, and environmental factors determine the level of generic Escherichia coli contamination on preharvested spinach..  81:2635-2650. 2015
• Efficient metabolic exchange and electron transfer within a syntrophic trichloroethene-degrading coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei..  81:2015-2024. 2015
• Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm..  81:890-899. 2015
• Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission..  81:1101-1110. 2015
• Simultaneous quantification of active carbon- and nitrogen-fixing communities and estimation of fixation rates using fluorescence in situ hybridization and flow cytometry..  80:6750-6759. 2014
• Bacillaene and sporulation protect Bacillus subtilis from predation by Myxococcus xanthus..  80:5603-5610. 2014
• Extracellular enzyme activity and microbial diversity measured on seafloor exposed basalts from Loihi seamount indicate the importance of basalts to global biogeochemical cycling..  80:4854-4864. 2014
• Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes..  80:4363-4373. 2014
• Superoxide production by a manganese-oxidizing bacterium facilitates iodide oxidation..  80:2693-2699. 2014
• Farm management, environment, and weather factors jointly affect the probability of spinach contamination by generic Escherichia coli at the preharvest stage..  80:2504-2515. 2014
• Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia..  80:2133-2141. 2014
• Extracellular Enzyme Activity and Microbial Diversity Measured on Seafloor Exposed Basalts from Loihi Seamount Indicate the Importance of Basalts to Global Biogeochemical Cycling.  80:4854-4864. 2014
• Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species..  79:7702-7708. 2013
• Role of bacterial communities in the natural suppression of Rhizoctonia solani bare patch disease of wheat (Triticum aestivum L.)..  79:7428-7438. 2013
• Diet complexity and estrogen receptor status affect the composition of the murine intestinal microbiota..  79:5763-5773. 2013
• Generic Escherichia coli contamination of spinach at the preharvest stage: effects of farm management and environmental factors..  79:4347-4358. 2013
• Site-directed mutations in the lanthipeptide mutacin 1140..  79:4015-4023. 2013
• Susceptibility of murine norovirus and hepatitis A virus to electron beam irradiation in oysters and quantifying the reduction in potential infection risks..  79:3796-3801. 2013
• Evaluation of Phytate-Degrading Lactobacillus Culture Administration to Broiler Chickens.  80:943-950. 2013
• Probing the role of sigma interaction and energetics in the catalytic efficiency of endo-1,4--xylanase..  78:8817-8821. 2012
• Association of nucleotide polymorphisms within the O-antigen gene cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with serogroups and genetic subtypes..  78:6689-6703. 2012
• NasT-mediated antitermination plays an essential role in the regulation of the assimilatory nitrate reductase operon in Azotobacter vinelandii..  78:6558-6567. 2012
• Two boundaries separate Borrelia burgdorferi populations in North America..  78:6059-6067. 2012
• Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica..  78:4561-4570. 2012
• Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation..  78:1424-1436. 2012
• Quantifying the reduction in potential health risks by determining the sensitivity of poliovirus type 1 chat strain and rotavirus SA-11 to electron beam irradiation of iceberg lettuce and spinach..  78:988-993. 2012
• Spontaneous Gac mutants of Pseudomonas biological control strains: cheaters or mutualists?.  77:7227-7235. 2011
• Prevalence and genotypic characteristics of Clostridium difficile in a closed and integrated human and swine population..  77:5755-5760. 2011
• Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer (vol 77, pg 3860, 2011).  77:5063-5063. 2011
• Effects of bacterial microflora of the lower digestive tract of free-range waterfowl on influenza virus activation..  77:4119-4125. 2011
• Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer..  77:3860-3869. 2011
• Isolation from animal tissue and genetic transformation of Coxiella burnetii are facilitated by an improved axenic growth medium..  77:3720-3725. 2011
• Diverse Borrelia burgdorferi strains in a bird-tick cryptic cycle..  77:1999-2007. 2011
• Iodide accumulation by aerobic bacteria isolated from subsurface sediments of a 129I-contaminated aquifer at the Savannah River site, South Carolina..  77:2153-2160. 2011
• The multifactorial basis for plant health promotion by plant-associated bacteria..  77:1548-1555. 2011
• Diversity of the fsr-gelE region of the Enterococcus faecalis genome but conservation in strains with partial deletions of the fsr operon..  77:442-451. 2011
• Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7..  77:669-683. 2011
• Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach..  76:6778-6786. 2010
• Interdomain conjugal transfer of DNA from bacteria to archaea..  76:5644-5647. 2010
• Regulation of morphogenesis and biocontrol properties in Trichoderma virens by a VELVET protein, Vel1..  76:2345-2352. 2010
• Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195..  75:7551-7555. 2009
• The olive fly endosymbiont, "Candidatus Erwinia dacicola," switches from an intracellular existence to an extracellular existence during host insect development..  75:7097-7106. 2009
• Flow-based microfluidic device for quantifying bacterial chemotaxis in stable, competing gradients..  75:4557-4564. 2009
• Climate and tick seasonality are predictors of Borrelia burgdorferi genotype distribution..  75:2476-2483. 2009
• Longitudinal study of antimicrobial resistance among Escherichia coli isolates from integrated multisite cohorts of humans and swine..  74:3672-3681. 2008
• Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels..  74:3718-3729. 2008
• Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site..  74:2728-2739. 2008
• Root infection and systemic colonization of maize by Colletotrichum graminicola..  74:823-832. 2008
• An inducible propane monooxygenase is responsible for N-nitrosodimethylamine degradation by Rhodococcus sp. strain RHA1..  73:6930-6938. 2007
• Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin..  73:4100-4109. 2007
• Microarray-based analysis of microbial community RNAs by whole-community RNA amplification..  73:563-571. 2007
• Tvbgn3, a beta-1,6-glucanase from the biocontrol fungus Trichoderma virens, is involved in mycoparasitism and control of Pythium ultimum..  72:7661-7670. 2006
• Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes..  72:5877-5883. 2006
• Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp..  72:6161-6168. 2006
• Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment..  71:7145-7151. 2005
• An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene..  71:3866-3871. 2005
• Genomic organization and molecular analysis of virulent bacteriophage 2972 infecting an exopolysaccharide-producing Streptococcus thermophilus strain..  71:4057-4068. 2005
• Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia..  71:1433-1444. 2005
• Use of artificial neural networks to accurately identify Cryptosporidium oocyst and Giardia cyst images..  71:80-84. 2005
• Effect of pyocyanin on a crude-oil-degrading microbial community..  70:4004-4011. 2004
• Negative cross-communication among wheat rhizosphere bacteria: effect on antibiotic production by the biological control bacterium Pseudomonas aureofaciens 30-84..  70:3103-3109. 2004
• Effect of pyocyanin on a crude-oil-degrading microbial community.  70:4004-4011. 2004
• Intraspecific diversity of Vibrio vulnificus in Galveston Bay water and oysters as determined by randomly amplified polymorphic DNA PCR..  69:3170-3175. 2003
• Identification of new genes positively regulated by Tri10 and a regulatory network for trichothecene mycotoxin production..  69:2731-2736. 2003
• Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica..  69:2058-2064. 2003
• Tri1 encodes the cytochrome P450 monooxygenase for C-8 hydroxylation during trichothecene biosynthesis in Fusarium sporotrichioides and resides upstream of another new Tri gene..  69:1607-1613. 2003
• Survival of GacS/GacA mutants of the biological control bacterium Pseudomonas aureofaciens 30-84 in the wheat rhizosphere..  68:3308-3314. 2002
• Identification of Cryptosporidium parvum oocysts by an artificial neural network approach..  68:1115-1121. 2002
• A Novel Regulatory Gene, Tri10, Controls Trichothecene Toxin Production and Gene Expression.  67:5294-5302. 2001
• A novel regulatory gene, Tri10, controls trichothecene toxin production and gene expression..  67:5294-5302. 2001
• A second quorum-sensing system regulates cell surface properties but not phenazine antibiotic production in Pseudomonas aureofaciens..  67:4305-4315. 2001
• Regulation of fumonisin B(1) biosynthesis and conidiation in Fusarium verticillioides by a cyclin-like (C-type) gene, FCC1..  67:1607-1612. 2001
• Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors..  66:3399-3407. 2000
• 2,4,6-trinitrotoluene reduction by carbon monoxide dehydrogenase from Clostridium thermoaceticum..  66:1474-1478. 2000
• Development of a selective medium for isolation of Helicobacter pylori from cattle and beef samples..  66:723-727. 2000
• Requirement of monooxygenase-mediated steps for sterigmatocystin biosynthesis by Aspergillus nidulans..  66:359-362. 2000
• Two-component transcriptional regulation of N-acyl-homoserine lactone production in Pseudomonas aureofaciens..  65:2294-2299. 1999
• Evaluation of toxic effects of aeration and trichloroethylene oxidation on methanotrophic bacteria grown with different nitrogen sources..  65:766-772. 1999
• Effect of nitrogen source on growth and trichloroethylene degradation by methane-oxidizing bacteria..  64:3451-3457. 1998
• Comparison of C18-carboxypropylbetaine and glass bead DNA extraction methods for detection of Mycobacterium bovis in bovine milk samples and analysis of samples by PCR..  64:3099-3101. 1998
• Delineating the specific influence of virus isoelectric point and size on virus adsorption and transport through sandy soils..  64:405-410. 1998
• Endophytic fungi in indigenous Australasian grasses associated with toxicity to livestock..  64:601-606. 1998
• Diversity of the ribulose bisphosphate carboxylase/oxygenase form I gene (rbcL) in natural phytoplankton communities..  63:3600-3606. 1997
• Biodegradation of individual and multiple chlorinated aliphatic hydrocarbons by methane-oxidizing cultures..  62:3371-3377. 1996
• Occurrence of airborne bacteria and pathogen indicators during land application of sewage sludge..  62:296-299. 1996
• Differential secretion of isoforms of Serratia marcescens extracellular nuclease..  61:4083-4088. 1995
• Gene cloning, sequence analysis, purification, and secretion by Escherichia coli of an extracellular lipase from Serratia marcescens..  61:2674-2680. 1995
• Identification of capsule-forming Bacillus anthracis spores with the PCR and a novel dual-probe hybridization format..  60:1622-1625. 1994
• Specific detection of Salmonella spp. by multiplex polymerase chain reaction..  59:1473-1479. 1993
• Seasonal Dynamics of Bacterial Colonization of Cotton Fiber and Effects of Moisture on Growth of Bacteria within the Cotton Boll..  59:974-980. 1993
• Degradation of Degradable Starch-Polyethylene Plastics in a Compost Environment.  59:1155-1161. 1993
• Use of an exotic carbon source to selectively increase metabolic activity and growth of Pseudomonas putida in soil.  59:2056-2063. 1993
• Cloning, expression, and nucleotide sequence of genes involved in production of pediocin PA-1, and bacteriocin from Pediococcus acidilactici PAC1.0..  58:2360-2367. 1992
• Contribution of phenazine antibiotic biosynthesis to the ecological competence of fluorescent pseudomonads in soil habitats..  58:2616-2624. 1992
• Characterization of a methane-utilizing bacterium from a bacterial consortium that rapidly degrades trichloroethylene and chloroform..  58:1886-1893. 1992
• Polymerase chain reaction and gene probe detection of the 2,4-dichlorophenoxyacetic acid degradation plasmid, pJP4..  58:1271-1275. 1992
• Biochemical and serological characterization of Carnobacterium spp. isolated from farmed and natural populations of striped bass and catfish..  57:3114-3120. 1991
• Genetic analysis of the antifungal activity of a soilborne Pseudomonas aureofaciens strain..  57:2928-2934. 1991
• Rapid method for processing soil samples for polymerase chain reaction amplification of specific gene sequences..  57:2283-2286. 1991
• Use of an A-T-rich DNA clone for identification and detection of Peronosclerospora sorghi..  57:2027-2032. 1991
• Product toxicity and cometabolic competitive inhibition modeling of chloroform and trichloroethylene transformation by methanotrophic resting cells..  57:1031-1037. 1991
• Production of the antibiotic phenazine-1-carboxylic acid by fluorescent Pseudomonas species in the rhizosphere of wheat.  56:908-912. 1990
• Evidence for plasmid linkage of raffinose utilization and associated -galactosidase and sucrose hydrolase activity in Pediococcus pentosaceus.  51:105-109. 1986
• Isolation and characterization of linear DNA elements from the Mitochondria of Gaeumannomyces graminis.  52:924-929. 1986
• Metabolism of aflatoxin B1 by rat hepatic microsomes induced by polyhalogenated biphenyl congeners..  49:882-886. 1985
• Transfer of sucrose-fermenting ability and nisin production phenotype among lactic streptococci.  49:627-633. 1985
• Ochratoxin A-induced teratogenesis in rats: partial protection by phenylalanine..  48:1186-1188. 1984
• Identification and enumeration of marine chroococcoid cyanobacteria by immunofluorescence..  46:553-559. 1983
• Plasmid transfer in Pediococcus spp.: intergeneric and intrageneric transfer of pIP501..  46:81-89. 1983
• Iron-chelating compounds produced by soil pseudomonads: Correlation with fungal growth inhibition.  46:128-132. 1983
• Bacterial growth in ground beef prepared from electrically stimulated and nonstimulated muscles..  41:915-918. 1981
• Short-term effects of South louisiana and kuwait crude oils on glucose utilization by marine bacterial populations..  40:341-345. 1980
• Microbial biomass and activity distribution in an anoxic, hypersaline basin..  37:466-470. 1979
• Enhanced virus replication in mammalian cells exposed to commercial emulsifiers..  35:297-300. 1978

Identity

International Standard Serial Number (ISSN)

• 0099-2240