HR job title
- Assistant Professor
- Contact Info
- Websites
- ORCiD
- 0000-0003-0605-9225
Suzuki, Masako Assistant Professor
Positions
- Assistant Professor, Nutrition, College of Agriculture and Life Sciences
Research Areas
- Overview
- Publications
- Research
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Overview
Publications
selected publications
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academic article
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Ketchum, H. C., Suzuki, M., & Dawlaty, M. M.
(2024).
Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification. Communications Biology.
7(1), 415.
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Rocks, D., Purisic, E., Gallo, E. F., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2023).
Egr1 is a sex-specific regulator of neuronal chromatin, synaptic plasticity, and behaviour. 5(01-05), 2023.12.20.572697.
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Ueda, K., Chin, S. S., Sato, N., Nishikawa, M., Yasuda, K., Miyasaka, N., ... Suzuki, M.
(2023).
Prenatal vitamin D deficiency alters immune cell proportions of young adult offspring through alteration of long-term stem cell fates. 4(09-22), 2023.09.11.557255.
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Bera, B. S., Thompson, T. V., Sosa, E., Nomaru, H., Reynolds, D., Dubin, R. A., ... Suzuki, M.
(2023).
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies. 16(1), 14.
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Chang, W., Zhao, Y., Raye, D., Xie, Q., Suzuki, M., Zheng, D., & Cvekl, A.
(2023).
Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation. Epigenetics and Chromatin.
16(1), 4.
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Zhou, Y., Yang, Y., Guo, L., Qian, J., Ge, J., Sinner, D., ... Cardoso, W. V.
(2022).
Airway basal cells show regionally distinct potential to undergo metaplastic differentiation. eLife.
11, e80083.
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Huang, H., Fang, Y., Jiang, M., Zhang, Y., Biermann, J., Melms, J. C., ... Que, J.
(2022).
Contribution of Trp63CreERT2-labeled cells to alveolar regeneration is independent of tuft cells. eLife.
11, e78217.
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Serra, C., Liu, H., Qian, J., Mori, M., Lu, J., & Cardoso, W. V.
(2022).
Prominin 1 and Notch regulate ciliary length and dynamics in multiciliated cells of the airway epithelium. iScience.
25(8), 104751-104751.
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Ma, L., Tang, Q., Gao, X., Lee, J., Lei, R., Suzuki, M., ... Dawlaty, M. M.
(2022).
Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis. 8(9), eabm3470.
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Rocks, D., Jaric, I., Tesfa, L., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2022).
Cell type-specific chromatin accessibility analysis in the mouse and human brain. Epigenetics.
17(2), 202-219.
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Suzuki, M., & Tomita, M.
(2022).
Genetic Variations of Vitamin A-Absorption and Storage-Related Genes, and Their Potential Contribution to Vitamin A Deficiency Risks Among Different Ethnic Groups. Frontiers in Nutrition.
9, 861619.
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Ulahannan, N., Cutler, R., Doa-Termine, R., Simes-Pires, C. A., Wijetunga, N. A., Croken, M. M., ... Greally, J. M.
(2022).
Genomic insights into host and parasite interactions during intracellular infection by Toxoplasma gondii. 17(9), e0275226-e0275226.
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Lundy, K., Greally, J. F., Essilfie-Bondzie, G., Olivier, J. B., Doa-Termine, R., Greally, J. M., & Suzuki, M.
(2022).
Vitamin D Deficiency During Development Permanently Alters Liver Cell Composition and Function. Frontiers in Endocrinology.
13, 860286.
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Foox, J., Nordlund, J., Lalancette, C., Gong, T., Lacey, M., Lent, S., ... Mason, C. E.
(2021).
The SEQC2 epigenomics quality control (EpiQC) study. 22(1), 332.
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Cwiek, A., Suzuki, M., deRonde, K., Conaway, M., Bennett, K. M., El Dahr, S., Reidy, K. J., & Charlton, J. R.
(2021).
Premature differentiation of nephron progenitor cell and dysregulation of gene pathways critical to kidney development in a model of preterm birth. Scientific Reports.
11(1), 21667.
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Suzuki, M., Wang, T., Garretto, D., Isasi, C. R., Cardoso, W. V., Greally, J. M., & Quadro, L.
(2021).
Disproportionate Vitamin A Deficiency in Women of Specific Ethnicities Linked to Differences in Allele Frequencies of Vitamin A-Related Polymorphisms. Nutrients.
13(6), 1743-1743.
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Batbayar, K., Ye, K., Waldman, S., Marsh, A., Shi, M., Siddiqui, T., ... Spivack, S.
(2021).
P58.02 Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status. JOURNAL OF THORACIC ONCOLOGY.
16(3), s536-S536.
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de Torrent, L., Zimmerman, S., Suzuki, M., Christopeit, M., Greally, J. M., & Mar, J. C.
(2020).
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data. BMC Bioinformatics.
21(Suppl 21), 562.
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Rastogi, D., Johnston, A. D., Nico, J., Loh, L. N., Jorge, Y., Suzuki, M., Macian, F., & Greally, J. M.
(2020).
Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways. 202(2), 259-274.
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Johnston, A. D., Abdulrazak, A., Sato, H., Maqbool, S. B., Suzuki, M., Greally, J. M., & Simes-Pires, C. A.
(2020).
A Cellular Stress Response Induced by the CRISPR-dCas9 Activation System Is Not Heritable Through Cell Divisions. CRISPR Journal.
3(3), 188-197.
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Nakahara, F., Pinho, S., Borger, D. K., Wei, Q., Maryanovich, M., Zahalka, A. H., ... Frenette, P. S.
(2019).
Engineering a Hematopoietic Stem Cell Niche By Revitalizing Mesenchymal Stem Cells with Five Transcription Factors. Blood.
134(Supplement_1), 5004-5004.
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Bhagat, T. D., Von Ahrens, D., Dawlaty, M., Zou, Y., Baddour, J., Achreja, A., ... Verma, A.
(2019).
Lactate-mediated epigenetic reprogramming regulates formation of human pancreatic cancer-associated fibroblasts. 8, e50663.
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Johnston, A. D., Simes-Pires, C. A., Thompson, T. V., Suzuki, M., & Greally, J. M.
(2019).
Functional genetic variants can mediate their regulatory effects through alteration of transcription factor binding. 10(1), 3472.
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Nakahara, F., Borger, D., Wei, Q., Pinho, S., Maryanovich, M., Zahalka, A., ... Frenette, P.
(2019).
2011 - ENGINEERING A HEMATOPOIETIC STEM CELL NICHE BY REVITALIZING MESENCHYMAL STEM CELLS. Experimental Hematology.
76, s45-S45.
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Jaric, I., Rocks, D., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2019).
Chromatin organization in the female mouse brain fluctuates across the oestrous cycle. 10(1), 2851.
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Nakahara, F., Borger, D. K., Wei, Q., Pinho, S., Maryanovich, M., Zahalka, A. H., ... Frenette, P. S.
(2019).
Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells. 21(5), 560-567.
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Shenoy, N., Bhagat, T. D., Cheville, J., Lohse, C., Bhattacharyya, S., Tischer, A., ... Verma, A.
(2019).
Ascorbic acid-induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma. 129(4), 1612-1625.
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Johnston, A. D., Simes-Pires, C. A., Suzuki, M., & Greally, J. M.
(2019).
High-efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells using a single-stranded donor oligonucleotide strategy. 2(1), 312.
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Kong, Y. u., Rastogi, D., Seoighe, C., Greally, J. M., & Suzuki, M.
(2019).
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data. 14(4), e0215987-e0215987.
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Chorro, L., Suzuki, M., Chin, S. S., Williams, T. M., Snapp, E. L., Odagiu, L., Labrecque, N., & Lauvau, G.
(2018).
Interleukin 2 modulates thymic-derived regulatory T cell epigenetic landscape. 9(1), 5368.
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Reidy, K. J., Hjorten, R. C., Simpson, C. L., Rosenberg, A. Z., Rosenblum, S. D., Kovesdy, C. P., ... Davis, R. L.
(2018).
Fetal-Not Maternal-APOL1 Genotype Associated with Risk for Preeclampsia in Those with African Ancestry. 103(3), 367-376.
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Suzuki, M., Liao, W., Wos, F., Johnston, A. D., DeGrazia, J., Ishii, J., ... Greally, J. M.
(2018).
Whole-genome bisulfite sequencing with improved accuracy and cost. 28(9), 1364-1371.
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Bartholdy, B., Lajugie, J., Yan, Z. i., Zhang, S., Mukhopadhyay, R., Greally, J. M., Suzuki, M., & Bouhassira, E. E.
(2018).
Mechanisms of establishment and functional significance of DNA demethylation during erythroid differentiation. 2(15), 1833-1852.
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Kong, Y. u., Berko, E. R., Marcketta, A., Maqbool, S. B., Simes-Pires, C. A., Kronn, D. F., ... Greally, J. M.
(2018).
Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq. 28(7), 1039-1052.
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Tozour, J. N., Delahaye, F., Suzuki, M., Praiss, A., Zhao, Y., Cai, L., ... Hughes, F.
(2018).
Intrauterine Hyperglycemia Is Associated with an Impaired Postnatal Response to Oxidative Damage. 27(10), 683-691.
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Oda, M., Wakabayashi, S., Ari Wijetunga, N., Yuasa, S., Enomoto, H., Kaneda, R., ... Makino, S.
(2018).
Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice. 19(1), 349.
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Bhattacharyya, S., Pradhan, K., Campbell, N., Mazdo, J., Vasantkumar, A., Maqbool, S., ... Verma, A.
(2017).
Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways. Genome Research.
27(11), 1830-1842.
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Seki, Y., Suzuki, M., Guo, X., Glenn, A. S., Vuguin, P. M., Fiallo, A., ... Charron, M. J.
(2017).
In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice. 158(9), 2860-2872.
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Do, C., Shearer, A., Suzuki, M., Terry, M. B., Gelernter, J., Greally, J. M., & Tycko, B.
(2017).
Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era. 18(1), 120.
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Bhagat, T. D., Zou, Y., Huang, S., Park, J., Palmer, M. B., Hu, C., ... Susztak, K.
(2017).
Notch Pathway Is Activated via Genetic and Epigenetic Alterations and Is a Therapeutic Target in Clear Cell Renal Cancer. 292(3), 837-846.
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Suzuki, M., Maekawa, R., Patterson, N. E., Reynolds, D. M., Calder, B. R., Reznik, S. E., ... Greally, J. M.
(2016).
Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus. 8(1), 67.
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Yuan, Z., Snchez Claros, C., Suzuki, M., Maggi, E. C., Kaner, J. D., Kinstlinger, N., ... Libutti, S. K.
(2016).
Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis. 7(11), 12633-12650.
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Ramos, M., Wijetunga, N. A., McLellan, A. S., Suzuki, M., & Greally, J. M.
(2015).
DNA demethylation by 5-aza-2'-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences. 8(1), 11.
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Li, Q., Suzuki, M., Wendt, J., Patterson, N., Eichten, S. R., Hermanson, P. J., ... Greally, J. M.
(2015).
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes. 43(12), e81-e81.
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Mullapudi, N., Ye, B., Suzuki, M., Fazzari, M., Han, W., Shi, M. K., ... Spivack, S. D.
(2015).
Genome Wide Methylome Alterations in Lung Cancer. 10(12), e0143826-e0143826.
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Hu, C. Y., Mohtat, D., Yu, Y., Ko, Y., Shenoy, N., Bhattacharya, S., ... Verma, A.
(2014).
Kidney cancer is characterized by aberrant methylation of tissue-specific enhancers that are prognostic for overall survival. 20(16), 4349-4360.
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Chamberlain, A. A., Lin, M., Lister, R. L., Maslov, A. A., Wang, Y., Suzuki, M., ... Zhou, B.
(2014).
DNA methylation is developmentally regulated for genes essential for cardiogenesis. 3(3), e000976.
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Berko, E. R., Suzuki, M., Beren, F., Lemetre, C., Alaimo, C. M., Calder, R. B., ... Greally, J. M.
(2014).
Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder. 10(5), e1004402-e1004402.
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Dunican, D. S., Cruickshanks, H. A., Suzuki, M., Semple, C. A., Davey, T., Arceci, R. J., ... Meehan, R. R.
(2013).
Lsh regulates LTR retrotransposon repression independently of Dnmt3b function. 14(12), R146-R146.
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Ikeda, R., Shiura, H., Numata, K., Sugimoto, M., Kondo, M., Mise, N., ... Abe, K.
(2013).
Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome. 20(6), 549-565.
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Bhattacharyya, S., Yu, Y., Suzuki, M., Campbell, N., Mazdo, J., Vasanthakumar, A., ... Verma, A.
(2013).
Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer. 41(16), e157-e157.
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Gendrel, A., Tang, Y. A., Suzuki, M., Godwin, J., Nesterova, T. B., Greally, J. M., Heard, E., & Brockdorff, N.
(2013).
Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. 33(16), 3150-3165.
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Wu, W., Bhagat, T. D., Yang, X., Song, J. H., Cheng, Y., Agarwal, R., ... Meltzer, S. J.
(2013).
Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. Gastroenterology.
144(5), 956-966.e4.
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Yu, Y., Mo, Y., Ebenezer, D., Bhattacharyya, S., Liu, H., Sundaravel, S., ... Verma, A.
(2013).
High resolution methylome analysis reveals widespread functional hypomethylation during adult human erythropoiesis. 288(13), 8805-8814.
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Reddington, J. P., Perricone, S. M., Nestor, C. E., Reichmann, J., Youngson, N. A., Suzuki, M., ... Meehan, R. R.
(2013).
Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes. 14(3), R25-R25.
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Heuck, C. J., Mehta, J., Bhagat, T., Gundabolu, K., Yu, Y., Khan, S., ... Singhal, S. B.
(2013).
Myeloma is characterized by stage-specific alterations in DNA methylation that occur early during myelomagenesis. 190(6), 2966-2975.
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Zhong, S., Suzuki, M., Peng, X. u., Shen, Z., Wang, X., Xu, T., ... Homma, Y.
(2013).
BK polyomavirus from patients with tissue-derived prostate adenocarcinoma. Future Virology.
8(3), 313-320.
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Nischal, S., Bhattacharyya, S., Christopeit, M., Yu, Y., Zhou, L. i., Bhagat, T. D., ... Verma, A.
(2013).
Methylome profiling reveals distinct alterations in phenotypic and mutational subgroups of myeloproliferative neoplasms. 73(3), 1076-1085.
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Ko, Y., Mohtat, D., Suzuki, M., Park, A., Izquierdo, M. C., Han, S. Y., ... Susztak, K.
(2013).
Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development. 14(10), R108-R108.
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Rastogi, D., Suzuki, M., & Greally, J. M.
(2013).
Differential epigenome-wide DNA methylation patterns in childhood obesity-associated asthma. 3(1), 2164.
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Suzuki, M., & Greally, J. M.
(2013).
Genome-wide DNA methylation analysis using massively parallel sequencing technologies. 50(1), 70-77.
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McLellan, A. S., Dubin, R. A., Jing, Q., Broin, P., Moskowitz, D., Suzuki, M., ... Greally, J. M.
(2012).
The Wasp System: an open source environment for managing and analyzing genomic data. 100(6), 345-351.
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Mullapudi, N., Suzuki, M., Fazzari, M., Han, W., & Spivack, S. D.
(2012).
Abstract A38: Whole methylome explorations of paired lung tumor and non-tumor clinical samples. CLINICAL CANCER RESEARCH.
18(3_Supplement), a38-a38.
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Jing, Q., McLellan, A., Greally, J. M., & Suzuki, M.
(2012).
Automated computational analysis of genome-wide DNA methylation profiling data from HELP-tagging assays. 815, 79-87.
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Hanoun, M., Eisele, L., Suzuki, M., Greally, J. M., Httmann, A., Aydin, S., ... Drig, J.
(2012).
Epigenetic silencing of the circadian clock gene CRY1 is associated with an indolent clinical course in chronic lymphocytic leukemia. 7(3), e34347-e34347.
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Smith, A. C., Suzuki, M., Thompson, R., Choufani, S., Higgins, M. J., Chiu, I. W., ... Weksberg, R.
(2012).
Maternal gametic transmission of translocations or inversions of human chromosome 11p15.5 results in regional DNA hypermethylation and downregulation of CDKN1C expression. 99(1), 25-35.
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Golden, A., McLellan, A. S., Dubin, R. A., Jing, Q., O Broin, P., Moskowitz, D., ... Greally, J. M.
(2012).
The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE. 175, 182-191.
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Suzuki, M., Oda, M., Ramos, M., Pascual, M., Lau, K., Stasiek, E., ... Greally, J. M.
(2011).
Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome. 21(11), 1833-1840.
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Pascual, M., Suzuki, M., Isidoro-Garcia, M., Padrn, J., Turner, T., Lorente, F., Dvila, I., & Greally, J. M.
(2011).
Epigenetic changes in B lymphocytes associated with house dust mite allergic asthma. 6(9), 1131-1137.
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Zhou, L. i., Opalinska, J., Sohal, D., Yu, Y., Mo, Y., Bhagat, T., ... Verma, A.
(2011).
Aberrant epigenetic and genetic marks are seen in myelodysplastic leukocytes and reveal Dock4 as a candidate pathogenic gene on chromosome 7q. 286(28), 25211-25223.
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Acosta, D., Suzuki, M., Connolly, D., Thompson, R. F., Fazzari, M. J., Greally, J. M., & Montagna, C.
(2011).
DNA methylation changes in murine breast adenocarcinomas allow the identification of candidate genes for human breast carcinogenesis. 22(3-4), 249-259.
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Alvarez, H., Opalinska, J., Zhou, L. i., Sohal, D., Fazzari, M. J., Yu, Y., ... Verma, A.
(2011).
Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis. 7(3), e1001356-e1001356.
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Nischal, S., Zhou, L. i., Yu, Y., Bhagat, T., Mo, Y., Heuck, C., ... Verma, A.
(2010).
Epigenomic Profiling of Myeloproliferative Diseases Reveal Idiopathic Myelofibrosis as An Epigenetically Distinct Subgroup and Highlights the Epigenetic Effects of Jak2V617F Mutation. Blood.
116(21), 627-627.
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Suzuki, M., & Greally, J. M.
(2010).
DNA methylation profiling using HpaII tiny fragment enrichment by ligation-mediated PCR (HELP). 52(3), 218-222.
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Suzuki, M., Jing, Q., Lia, D., Pascual, M., McLellan, A., & Greally, J. M.
(2010).
Optimized design and data analysis of tag-based cytosine methylation assays. 11(4), R36-R36.
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McLellan, A. S., Dubin, R. A., Jing, Q., Maqbool, S. B., Olea, R., Westby, G., ... Greally, J. M.
(2009).
The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease. 1(1), 33-38.
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Oda, M., Tanaka, S., Yamazaki, Y., Ohta, H., Iwatani, M., Suzuki, M., ... Shiota, K.
(2009).
Establishment of trophoblast stem cell lines from somatic cell nuclear-transferred embryos. 106(38), 16293-16297.
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Thompson, R. F., Suzuki, M., Lau, K. W., & Greally, J. M.
(2009).
A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. 25(17), 2164-2170.
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Oda, M., Glass, J. L., Thompson, R. F., Mo, Y., Olivier, E. N., Figueroa, M. E., ... Greally, J. M.
(2009).
High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers. 37(12), 3829-3839.
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Suzuki, M., Sato, S., Arai, Y., Shinohara, T., Tanaka, S., Greally, J. M., Hattori, N., & Shiota, K.
(2007).
A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse. 12(12), 1305-1314.
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Sakamoto, H., Suzuki, M., Abe, T., Hosoyama, T., Himeno, E., Tanaka, S., ... Shiota, K.
(2007).
Cell type-specific methylation profiles occurring disproportionately in CpG-less regions that delineate developmental similarity. 12(10), 1123-1132.
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Ikegami, K., Iwatani, M., Suzuki, M., Tachibana, M., Shinkai, Y., Tanaka, S., ... Shiota, K.
(2007).
Genome-wide and locus-specific DNA hypomethylation in G9a deficient mouse embryonic stem cells. 12(1), 1-11.
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Wakayama, S., Jakt, M. L., Suzuki, M., Araki, R., Hikichi, T., Kishigami, S., ... Wakayama, T.
(2006).
Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocysts. 24(9), 2023-2033.
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Khulan, B., Thompson, R. F., Ye, K., Fazzari, M. J., Suzuki, M., Stasiek, E., ... Greally, J. M.
(2006).
Comparative isoschizomer profiling of cytosine methylation: the HELP assay. 16(8), 1046-1055.
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Imakawa, K., Imai, M., Sakai, A., Suzuki, M., Nagaoka, K., Sakai, S., ... Christenson, R. K.
(2006).
Regulation of conceptus adhesion by endometrial CXC chemokines during the implantation period in sheep. 73(7), 850-858.
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Imakawa, K., Kim, M., Matsuda-Minehata, F., Ishida, S., Iizuka, M., Suzuki, M., ... Christenson, R. K.
(2006).
Regulation of the ovine interferon-tau gene by a blastocyst-specific transcription factor, Cdx2. 73(5), 559-567.
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Kremenskoy, M., Kremenska, Y., Suzuki, M., Imai, K., Takahashi, S., Hashizume, K., Yagi, S., & Shiota, K.
(2006).
DNA methylation profiles of donor nuclei cells and tissues of cloned bovine fetuses. 52(2), 259-266.
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Kremenskoy, M., Kremenska, Y., Suzuki, M., Imai, K., Takahashi, S., Hashizume, K., Yagi, S., & Shiota, K.
(2006).
Epigenetic characterization of the CpG islands of bovine Leptin and POU5F1 genes in cloned bovine fetuses. Journal of Reproduction and Development.
52(2), 277-285.
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Nishino, K., Ohgane, J., Suzuki, M., Hattori, N., & Shiota, K.
(2006).
Methylation in embryonic stem cells in vitro. 329, 421-445.
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Hattori, N., Abe, T., Hattori, N., Suzuki, M., Matsuyama, T., Yoshida, S., Li, E. n., & Shiota, K.
(2004).
Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells. 14(9), 1733-1740.
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Fujimoto, W., Kimura, K., Suzuki, M., Syuto, B., Onuma, M., & Iwanaga, T.
(2004).
Quantitative changes in serum concentration of bovine gut chitinase in Theileria infection. 66(3), 291-294.
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Suzuki, M., Fujimoto, W., Goto, M., Morimatsu, M., Syuto, B., & Iwanaga, T.
(2002).
Cellular expression of gut chitinase mRNA in the gastrointestinal tract of mice and chickens. 50(8), 1081-1089.
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Suzuki, M., Morimatsu, M., & Syuto, B.
(2002).
The identification and properties of chitin-binding protein b01 (CBPb01). 64(6), 477-481.
-
FUJIMOTO, W., SUZUKI, M., KIMURA, K., & IWANAGA, T.
(2002).
Cellular Expression of the Gut Chitinase in the Stomach of Frogs Xenopuslaevis and Rana catesbeiana. Biomedical Research.
23(2), 91-99.
-
Suzuki, M., Morimatsu, M., Yamashita, T., Iwanaga, T., & Syuto, B.
(2001).
A novel serum chitinase that is expressed in bovine liver. 506(2), 127-130.
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Alvarez, H., Opalinska, J., Zhou, L. i., Sohal, D., Fazzari, M. J., Yu, Y., ... Verma, A.
Correction: Widespread Hypomethylation Occurs Early and Synergizes with Gene Amplification during Esophageal Carcinogenesis. PLOS Genetics.
7(5), 10.1371/annotation/8dcded85-a924-40f4-a7ea-56.
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MacArthur, I. C., Ma, L., Huang, C., Bhavsar, H., Suzuki, M., & Dawlaty, M. M.
Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence. Science Advances.
10(35), eado5424.
-
Ueda, K., Chin, S. S., Sato, N., Nishikawa, M., Yasuda, K., Miyasaka, N., ... Suzuki, M.
Prenatal vitamin D deficiency exposure leads to long-term changes in immune cell proportions. Scientific Reports.
14(1), 19899.
-
Ketchum, H. C., Suzuki, M., & Dawlaty, M. M.
(2024).
Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification. Communications Biology.
7(1), 415.
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chapter
-
Suzuki, M., & Greally, J. M.
(2011).
HELPTagging: TagBased GenomeWide Cytosine Methylation Profiling. TagBased Next Generation Sequencing.
(pp. 299-309).
Wiley.
-
Suzuki, M., & Greally, J. M.
(2011).
HELPTagging: TagBased GenomeWide Cytosine Methylation Profiling. TagBased Next Generation Sequencing.
(pp. 299-309).
Wiley.
-
conference paper
-
Batbayar, K., Ye, K. Q., Liao, W., Shi, M. K., Waldman, S., Marsh, A., ... Spivack, S. D.
(2023).
Bronchial Field Basal Cells Show Methylome-Wide Characteristics Reflective of Smoking. a5742-a5742.
-
Batbayar, K., Ye, K., Waldman, S., Marsh, A., Shi, M. K., Siddiqui, T., ... Spivack, S. D.
(2022).
Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status. a4688-a4688.
-
Batbayar, K., Ye, K., Waldman, S., Marsh, A., Shi, M., Siddiqui, T., ... Spivack, S. D.
(2021).
Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status of the Donor. a4837-a4837.
-
Rocks, D., Jaric, I., Gallo, E., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2020).
The Role of Egr1 in Driving Ventral Hippocampal Gene Expression Patterns Underlying Sex Hormone-Dependent Changes in Anxiety-Like Behavior Within Females. Biological Psychiatry.
S453-S453.
-
Rocks, D., Jaric, I., Gallo, E., Greally, J., Suzuki, M., & Kundakovic, M.
(2019).
Dynamic Chromatin Remodeling and Sex-Specific Risk for Anxiety and Depression. Neuropsychopharmacology.
233-233.
-
Jaric, I., Rocks, D., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2018).
Neuronal Chromatin Dynamics and Anxiety-Related Phenotypes Across the Estrous Cycle. Biological Psychiatry.
S112-S112.
-
Spivack, S. D., Mullapudi, N., Ye, B., Suzuki, M., Fazzari, M. J., Han, W., ... Locker, J.
(2015).
Coupling A Methylome And Transcriptome Survey Of Human Lung Cancer. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE.
-
Mullapudi, N., Ye, B., Suzuki, M., Fazzari, M., Han, W., Shi, M., ... Spivack, S. D.
(2015).
Genome-Wide Methylome Alterations in Lung Cancer. JOURNAL OF THORACIC ONCOLOGY.
S481-S481.
-
Yuan, Z., Geha, R., Suzuki, M., Corn, A., Jing, Q., Sanchez, C., ... Libutti, S. K.
(2014).
Aberrant Activation of DNA Methyltransferase 1 (DNMT1) Mediated Global DNA Methylation and Implicates Sox/Wnt/(a)over-cap-Catenin Signaling Pathway in the Multiple Endocrine Neoplasm Type 1 (MEN1) Syndrome. Pancreas.
494-494.
-
Rastogi, D., Suzuki, M., & Greally, J.
(2013).
Differential Epigenome-Wide Dna Methylation Patterns In Childhood Obesity-Associated Asthma. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE.
-
Spivack, S. D., Mullapudi, N., Suzuki, M., Fazzari, M., Keller, S., & Han, W.
(2012).
Whole Methylome Explorations Of Paired Lung Tumor And Non-Tumor Clinical Samples. a3496-a3496.
-
Samaraweera, L., Liu, L., Suzuki, M., Horwitz, S. B., & McDaid, H. M.
(2012).
Senescence reversion contributes to acquired drug resistance. Cancer Research.
4230-4230.
-
Mullapudi, N., Shi, M., Suzuki, M., & Spivack, S.
(2011).
Whole methylome explorations of paired tumor and non-tumor clinical samples using HELP. Cancer Research.
4820-4820.
-
Mullapudi, N., Suzuki, M., Fazzari, M., & Spivack, S.
(2011).
METHYLATION EVENTS IN LUNG CANCER: WHOLE GENOME EXPLORATIONS OF PAIRED TUMOR AND NON-TUMOR CLINICAL SAMPLES. JOURNAL OF THORACIC ONCOLOGY.
S1028-S1029.
-
Nischal, S., Zhou, L. i., Yu, Y., Bhagat, T., Mo, Y., Heuck, C., ... Verma, A.
(2010).
Epigenomic Profiling of Myeloproliferative Diseases Reveal Idiopathic Myelofibrosis as An Epigenetically Distinct Subgroup and Highlights the Epigenetic Effects of Jak2V617F Mutation. Blood.
276-276.
-
Batbayar, K., Ye, K. Q., Liao, W., Shi, M. K., Waldman, S., Marsh, A., ... Spivack, S. D.
(2023).
Bronchial Field Basal Cells Show Methylome-Wide Characteristics Reflective of Smoking. a5742-a5742.
-
institutional repository document
-
Rocks, D., Jaric, I., Bellia, F., Cham, H., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2023).
Early-life stress and ovarian hormones alter transcriptional regulation in the nucleus accumbens resulting in sex-specific responses to cocaine
-
Bera, B. S., Thompson, T. V., Sosa, E., Nomaru, H., Reynolds, D., Dubin, R. A., ... Suzuki, M.
(2022).
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide conjugated antibodies
-
Boutet, M., Erler, P., Nishitani, K., Couturier, N., Zhang, Z., Barbieux, E., ... Guo, W.
(2022).
Loss of the MLL3 tumor suppressor accelerates breast tumor onset via HIF1-induced CCL2-mediated recruitment of CCR2+ regulatory T cells
-
Cwiek, A., Suzuki, M., deRonde, K., Conaway, M., Bennett, K., Dahr, S. E., Reidy, K., & Charlton, J.
(2021).
Premature differentiation of nephron progenitors and dysregulation of gene pathways critical to kidney development in a model of preterm birth
-
Suzuki, M., Wang, T., Garretto, D. J., Isasi, C. R., Cardoso, W. V., Greally, J. M., & Quadro, L.
(2021).
Disproportionate vitamin A deficiency in pregnant women of specific ethnicities in the United States and ethnic differences in allele frequencies of polymorphisms of vitamin A-related genes
-
Suzuki, M., Wang, T., Garretto, D. J., Isasi, C. R., Cardoso, W. V., Greally, J. M., & Quadro, L.
(2020).
Association of genetic variation with disproportionate vitamin A deficiency in pregnant women of certain ethnicities in the United States
-
Suzuki, M., Wang, T., Garretto, D. J., Isasi, C. R., Cardoso, W. V., Greally, J. M., & Quadro, L.
(2020).
Genetic background contributions to the disproportion of vitamin A deficiency in pregnant women of certain ethnicities in populations of the United States
-
Rocks, D., Jaric, I., Tesfa, L., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2020).
Cell Type-Specific Chromatin Accessibility Analysis in the Mouse and Human Brain
-
Johnston, A. D., Abdulrazak, A., Sato, H., Maqbool, S. B., Suzuki, M., Greally, J. M., & Simes-Pires, C. A.
(2019).
A cellular stress response induced by the CRISPR/dCas9 activation system is not heritable through cell divisions
-
de Torrent, L., Zimmerman, S., Suzuki, M., Christopeit, M., Greally, J. M., & Mar, J. C.
(2019).
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data
-
Johnston, A. D., Simes-Pires, C. A., Suzuki, M., & Greally, J. M.
(2018).
High efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells
-
Kong, Y. u., Rastogi, D., Seoighe, C., Greally, J. M., & Suzuki, M.
(2018).
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data
-
Suzuki, M., Liao, W., Wos, F., Johnston, A. D., DeGrazia, J., Ishii, J., ... Greally, J. M.
(2017).
Whole Genome Bisulphite Sequencing Using the Illumina Hiseq X System
-
Kong, Y. u., Berko, E. R., Marcketta, A., Maqbool, S. B., Simes-Pires, C. A., Kronn, D. F., ... Greally, J. M.
(2017).
Mosaic chromosomal aneuploidy detection by sequencing (MAD-seq)
-
Ulahannan, N., Suzuki, M., Simes-Pires, C. A., Wicik, Z., Wijetunga, N. A., Croken, M. M., ... Greally, J. M.
(2017).
Intragenomic Redistribution of Host Transcription Factor Binding With Toxoplasma Gondii Infection
-
Berko, E. R., Suzuki, M., Beren, F., Lemetre, C., Alaimo, C. M., Calder, R. B., ... Greally, J. M.
(2014).
Mosaic Epigenetic Dysregulation of Ectodermal Cells in Autism Spectrum Disorder
-
Rocks, D., Jaric, I., Bellia, F., Cham, H., Greally, J. M., Suzuki, M., & Kundakovic, M.
(2023).
Early-life stress and ovarian hormones alter transcriptional regulation in the nucleus accumbens resulting in sex-specific responses to cocaine
Research
principal investigator on
investigator on
- Cell specific Partitioning Defective Par1a/b deletion effects on renal repair awarded by National Institutes of Health - (Bethesda, Maryland, United States) 2021 - 2026
- Epigenetic regulation of brain and behavior by the estrous cycle awarded by National Institutes of Health - (Bethesda, Maryland, United States) 2021 - 2026
- Enhancing pathogen-specific memory CD8+ T cell responses in vivo awarded by National Institutes of Health - (Bethesda, Maryland, United States) 2018 - 2023
Teaching
teaching activities
- BICH491 Hnr-research Instructor
- BIMS491 Hnr-research Instructor
- GENE681 Seminar Instructor
- GENE682 Seminar Presentation Instructor
- GENE691 Research Instructor
- NUTR291 Research Instructor
- NUTR301 Nutr Through Life Instructor
- NUTR406 Nutr Dev Origins Hlth Diseases Instructor
- NUTR481 Seminar Instructor
- NUTR491 Hnr-research Instructor
Background
education and training
- M.S. in Clinical Research Methods, Yeshiva University - (New York, New York, United States) 2014
- Ph.D. in Veterinary Sciences, Gifu University - (Gifu City, Japan) 2002
- D.V.M., Iwate University - (Morioka, Japan) 1998
Contact
first name
- Masako
has last name
- Suzuki
Other
In the News
- masako.suzuki@ag.tamu.edu