selected publications
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academic article
- Ding, Z., Lamb, T. M., Boukhris, A., Porter, R., & Bell-Pedersen, D. (2021). Circadian Clock Control of Translation Initiation Factor eIF2 Activity Requires eIF2-Dependent Recruitment of Rhythmic PPP-1 Phosphatase in Neurospora crassa. mBio.
- Karki, S., Castillo, K., Ding, Z., Kerr, O., Lamb, T. M., Wu, C., Sachs, M. S., & Bell-Pedersen, D. (2020). Circadian clock control of eIF2 phosphorylation is necessary for rhythmic translation initiation. Proceedings of the National Academy of Sciences of USA.
- Alder-Rangel, A., Idnurm, A., Brand, A. C., Brown, A., Gorbushina, A., Kelliher, C. M., ... Rangel, D. (2020). The Third International Symposium on Fungal Stress - ISFUS. Fungal Biol.
- Baek, M., Virgilio, S., Lamb, T. M., Ibarra, O., Andrade, J. M., Gonalves, R. D., ... Hong, C. I. (2019). Circadian clock regulation of the glycogen synthase (gsn) gene by WCC is critical for rhythmic glycogen metabolism in Neurospora crassa. Proceedings of the National Academy of Sciences of USA.
- Goldsmith, C. S., Kim, S. M., Karunarathna, N., Neuendorff, N., Toussaint, L. G., Earnest, D. J., & Bell-Pedersen, D (2019). Correction to: inhibition of p38 MAPK activity leads to cell type-specific effects on the molecular circadian clock and time-dependent reduction of glioma cell invasiveness. BMC Cancer. 19(1), 101.
- Wu, C., Dasgupta, A., Shen, L., Bell-Pedersen, D., & Sachs, M. S. (2018). The cell free protein synthesis system from the model filamentous fungus Neurospora crassa. Methods. 137, 11-19.
- Goldsmith, C. S., Kim, S. M., Karunarathna, N., Neuendorff, N., Toussaint, L. G., Earnest, D. J., & Bell-Pedersen, D (2018). Inhibition of p38 MAPK activity leads to cell type-specific effects on the molecular circadian clock and time-dependent reduction of glioma cell invasiveness. BMC Cancer. 18(1), 43.
- Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., ... Hogenesch, J. B. (2017). Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 32(5), 380-393.
- Dekhang, R., Wu, C., Smith, K. M., Lamb, T. M., Peterson, M., Bredeweg, E. L., ... Bell-Pedersen, D. (2017). The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion. G3 Genes|Genomes|Genetics. 7(1), 129-142.
- Caster, S. Z., Castillo, K., Sachs, M. S., & Bell-Pedersen, D. (2016). Circadian clock regulation of mRNA translation through eukaryotic elongation factor eEF-2. Proceedings of the National Academy of Sciences of USA. 113(34), 9605-9610.
- Wu, C., Yang, F., Smith, K. M., Peterson, M., Dekhang, R., Zhang, Y., ... Sachs, M. S. (2014). Genome-wide characterization of light-regulated genes in Neurospora crassa. G3 Genes|Genomes|Genetics. 4(9), 1731-1745.
- Goldsmith, C. S., & Bell-Pedersen, D (2013). Diverse roles for MAPK signaling in circadian clocks. ADVANCES IN GENETICS, VOL 84. 84, 1-39.
- Bennett, L. D., Beremand, P., Thomas, T. L., & Bell-Pedersen, D. (2013). Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa. EUKARYOTIC CELL. 12(1), 59-69.
- Lamb, T. M., Finch, K. E., & Bell-Pedersen, D (2012). The Neurospora crassa OS MAPK pathway-activated transcription factor ASL-1 contributes to circadian rhythms in pathway responsive clock-controlled genes. Fungal Genet Biol. 49(2), 180-188.
- Lakin-Thomas, P. L., Bell-Pedersen, D., & Brody, S (2011). The genetics of circadian rhythms in Neurospora. ADVANCES IN GENETICS, VOL 84. 74, 55-103.
- Bell-Pedersen, D (2010). Fungal photobiology. Introduction. Fungal Genet Biol. 47(11), 879-880.
- Bell-Pedersen, D., & Borkovich, K. A. (2009). The 2009 George W. Beadle Award. GENETICS. 181(3), 831-833.
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Bell-Pedersen, D., & Borkovich, K. A
(2009).
The 2009 George W. Beadle Award Jay C. Dunlap Honors and Awards. GENETICS.
181(3), 831-833.
- de Paula, R. M., Lamb, T. M., Bennett, L., & Bell-Pedersen, D (2008). A connection between MAPK pathways and circadian clocks. Cell Cycle. 7(17), 2630-2634.
- Vitalini, M. W., de Paula, R. M., Goldsmith, C. S., Jones, C. A., Borkovich, K. A., & Bell-Pedersen, D (2007). Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK. Proceedings of the National Academy of Sciences of USA. 104(46), 18223-18228.
- de Paula, R. M., Vitalini, M. W., Gomer, R. H., & Bell-Pedersen, D. (2007). Complexity of the Neurospora crassa circadian clock system: multiple loops and oscillators. CLOCKS AND RHYTHMS. 72(1), 345-351.
- Beasley, A. K., Lamb, T. M., Versaw, W. K., & Bell-Pedersen, D. (2006). A ras-1bd Mauriceville strain for mapping mutations in Oak Ridge ras-1bdstrains. Fungal Genetics Reports. 53(1), 30-33.
- Vitalini, M. W., de Paula, R. M., Park, W. D., & Bell-Pedersen, D. (2006). The rhythms of life: circadian output pathways in Neurospora. Journal of Biological Rhythms. 21(6), 432-444.
- de Paula, R. M., Lewis, Z. A., Greene, A. V., Seo, K. S., Morgan, L. W., Vitalini, M. W., ... Bell-Pedersen, D. (2006). Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes. Journal of Biological Rhythms. 21(3), 159-168.
- Liu, Y. i., & Bell-Pedersen, D (2006). Circadian rhythms in Neurospora crassa and other filamentous fungi. EUKARYOTIC CELL. 5(8), 1184-1193.
- Galagan, J. E., Calvo, S. E., Cuomo, C., Ma, L., Wortman, J. R., Batzoglou, S., ... Birren, B. W. (2005). Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438(7071), 1105-1115.
- Bell-Pedersen, D., Cassone, V. M., Earnest, D. J., Golden, S. S., Hardin, P. E., Thomas, T. L., & Zoran, M. J. (2005). Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet. 6(7), 544-556.
- Pregueiro, A. M., Price-Lloyd, N., Bell-Pedersen, D., Heintzen, C., Loros, J. J., & Dunlap, J. C (2005). Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles. Proceedings of the National Academy of Sciences of USA. 102(6), 2210-2215.
- Xie, X., Wilkinson, H. H., Correa, A., Lewis, Z. A., Bell-Pedersen, D., & Ebbole, D. J. (2004). Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genet Biol. 41(12), 1104-1119.
- Borkovich, K. A., Alex, L. A., Yarden, O., Freitag, M., Turner, G. E., Read, N. D., ... Pratt, R. (2004). Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol Rev. 68(1), 1-108.
- Vitalini, M. W., Morgan, L. W., March, I. J., & Bell-Pedersen, D (2004). A genetic selection for circadian output pathway mutations in Neurospora crassa. GENETICS. 167(1), 119-129.
- Allen, G. C., Farnell, Y., Bell-Pedersen, D., Cassone, V. M., & Earnest, D. J. (2004). Effects of altered Clock gene expression on the pacemaker properties of SCN2.2 cells and oscillatory properties of NIH/3T3 cells. Neuroscience. 127(4), 989-999.
- Correa, A., Lewis, Z. A., Greene, A. V., March, I. J., Gomer, R. H., & Bell-Pedersen, D. (2003). Multiple oscillators regulate circadian gene expression in Neurospora. Proceedings of the National Academy of Sciences of USA. 100(23), 13597-13602.
- Bailey, M. J., Beremand, P. D., Hammer, R., Bell-Pedersen, D., Thomas, T. L., & Cassone, V. M. (2003). Transcriptional profiling of the chick pineal gland, a photoreceptive circadian oscillator and pacemaker. Molecular Endocrinology. 17(10), 2084-2095.
- Galagan, J. E., Calvo, S. E., Borkovich, K. A., Selker, E. U., Read, N. D., Jaffe, D., ... Birren, B. (2003). The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422(6934), 859-868.
- Greene, A. V., Keller, N., Haas, H., & Bell-Pedersen, D (2003). A circadian oscillator in Aspergillus spp. regulates daily development and gene expression. EUKARYOTIC CELL. 2(2), 231-237.
- Morgan, L. W., Greene, A. V., & Bell-Pedersen, D (2003). Circadian and light-induced expression of luciferase in Neurospora crassa. Fungal Genet Biol. 38(3), 327-332.
- Lewis, Z. A., Correa, A., Schwerdtfeger, C., Link, K. L., Xie, X., Gomer, R. H., ... Bell-Pedersen, D. (2002). Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa. Molecular Microbiology. 45(4), 917-931.
- Bobrowicz, P., Pawlak, R., Correa, A., Bell-Pedersen, D., & Ebbole, D. J. (2002). The Neurospora crassa pheromone precursor genes are regulated by the mating type locus and the circadian clock. Molecular Microbiology. 45(3), 795-804.
- Correa, A., & Bell-Pedersen, D (2002). Distinct signaling pathways from the circadian clock participate in regulation of rhythmic conidiospore development in Neurospora crassa. EUKARYOTIC CELL. 1(2), 273-280.
- Shinohara, M. L., Correa, A., Bell-Pedersen, D., Dunlap, J. C., & Loros, J. J (2002). Neurospora clock-controlled gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development. EUKARYOTIC CELL. 1(1), 33-43.
- Shrode, L. B., Lewis, Z. A., White, L. D., Bell-Pedersen, D., & Ebbole, D. J. (2001). vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genet Biol. 32(3), 169-181.
- Zhu, H., Nowrousian, M., Kupfer, D., Colot, H. V., Berrocal-Tito, G., Lai, H., ... Dunlap, J. C (2001). Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes. GENETICS. 157(3), 1057-1065.
- Morgan, L. W., Feldman, J. F., & Bell-Pedersen, D (2001). Genetic interactions between clock mutations in Neurospora crassa: can they help us to understand complexity?. Philosophical Transactions of the Royal Society B: Biological Sciences. 356(1415), 1717-1724.
- Bell-Pedersen, D., Lewis, Z. A., Loros, J. J., & Dunlap, J. C (2001). The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg-2) gene. Molecular Microbiology. 41(4), 897-909.
- Bell-Pedersen, D. (2000). Biological Rhythms and Photoperiodism in Plants. P. J. Lumsden , A. J. Millar. The Quarterly Review of Biology.
- Bell-Pedersen, D (2000). Understanding circadian rhythmicity in Neurospora crassa: from behavior to genes and back again. Fungal Genet Biol. 29(1), 1-18.
- Bell-Pedersen, D (1998). Keeping pace with Neurospora circadian rhythms. Microbiology. 144 ( Pt 7)(7), 1699-1711.
- Bell-Pedersen, D., Shinohara, M. L., Loros, J. J., & Dunlap, J. C (1996). Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific. Proceedings of the National Academy of Sciences of USA. 93(23), 13096-13101.
- Bell-Pedersen, D., Dunlap, J. C., & Loros, J. J (1996). Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene. Mol Cell Biol. 16(2), 513-521.
- Dunlap, J. C., Loros, J. J., Merrow, M., Crosthwaite, S., Bell-Pedersen, D., Garceau, N., ... Luo, C (1996). The genetic and molecular dissection of a prototypic circadian system. FINE ARTS, NEUROLOGY, AND NEUROSCIENCE: NEURO-HISTORICAL DIMENSIONS. 111, 11-27.
- Dunlap, J. C., Loros, J. J., Aronson, B. D., Merrow, M., Crosthwaite, S., Bell-Pedersen, D., ... Garceau, N. Y (1995). The genetic basis of the circadian clock: identification of frq and FRQ as clock components in Neurospora. Ciba Found Symp. 183, 3-17.
- Bell-Pedersen, D., Dunlap, J. C., & Loros, J. J (1992). THE NEUROSPORA CIRCADIAN CLOCK-CONTROLLED GENE, CCG-2, IS ALLELIC TO EAS AND ENCODES A FUNGAL HYDROPHOBIN REQUIRED FOR FORMATION OF THE CONIDIAL RODLET LAYER. GENES & DEVELOPMENT. 6(12A), 2382-2394.
- Bell-Pedersen, D., Dunlap, J. C., & Loros, J. J (1992). The Neurospora circadian clock-controlled gene, ccg-2, is allelic to eas and encodes, a fungal hydrophobin required for formation of the conidial rodlet layer. GENES & DEVELOPMENT. 6(12 A), 2382-2394.
- Bell-Pedersen, D., Galloway Salvo, J. L., & Belfort, M (1991). A TRANSCRIPTION TERMINATOR IN THE THYMIDYLATE SYNTHASE (THYA) STRUCTURAL GENE OF ESCHERICHIA-COLI AND CONSTRUCTION OF A VIABLE THYA-KMR DELETION. J Bacteriol. 173(3), 1193-1200.
- Bell-Pedersen, D., Quirk, S. M., Bryk, M., & Belfort, M (1991). I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target. Proceedings of the National Academy of Sciences of USA.
- Bell-Pedersen, D., Quirk, S., Clyman, J., & Belfort, M (1990). INTRON MOBILITY IN PHAGE-T4 IS DEPENDENT UPON A DISTINCTIVE CLASS OF ENDONUCLEASES AND INDEPENDENT OF DNA-SEQUENCES ENCODING THE INTRON CORE - MECHANISTIC AND EVOLUTIONARY IMPLICATIONS. NUCLEIC ACIDS RESEARCH. 18(13), 3763-3770.
- Bell-Pedersen, D., Quirk, S. M., Aubrey, M., & Belfort, M (1989). A SITE-SPECIFIC ENDONUCLEASE AND CO-CONVERSION OF FLANKING EXONS ASSOCIATED WITH THE MOBILE TD-INTRON OF PHAGE-T4. Gene. 82(1), 119-126.
- Quirk, S. M., Bell-Pedersen, D., & Belfort, M (1989). INTRON MOBILITY IN THE T-EVEN PHAGES - HIGH-FREQUENCY INHERITANCE OF GROUP-I INTRONS PROMOTED BY INTRON OPEN READING FRAMES. Cell. 56(3), 455-465.
- Gott, J. M., Zeeh, A., Bell-Pedersen, D., Ehrenman, K., Belfort, M., & Shub, D. A (1988). GENES WITHIN GENES - INDEPENDENT EXPRESSION OF PHAGE-T4 INTRON OPEN READING FRAMES AND THE GENES IN WHICH THEY RESIDE. GENES & DEVELOPMENT. 2(12B), 1791-1799.
- Gott, J. M., Zeeh, A., Bell-Pedersen, D., Ehrenman, K., Belfort, M., & Shub, D. A. (1988). Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside. GENES & DEVELOPMENT. 2(12 B), 1791-1799.
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chapter
- Vitalini, M. W., Dunlap, J. C., Heintzen, C., Liu, Y. i., Loros, J., & BellāPedersen, D. (2010). Circadian Rhythms. Cellular and Molecular Biology of Filamentous Fungi. (pp. 442-466). ASM Press.
- Correa, A., Greene, A. V., Lewis, Z. A., & Bell-Pedersen, D. (2003). 3 Molecular Genetics of Circadian Rhythms in Neurospora Crassa. Applied Mycology and Biotechnology. Fungal Genomics. (pp. 43-63). Elsevier.
- Bell-Pedersen, D. (2002). Circadian Rhythms in Neurospora crassa. Molecular Biology of Fungal Development. CRC Press.
- Bell-Pedersen, D., Quirk, S. M., Aubrey, M., & Belfort, M. (1989). A site-specific endonuclease and co-conversion of flanking exons associated with the mobile td intron of phage T4**Presented at the Albany Conference on RNA: Catalysis, Splicing, Evolution. Rensselaerville, N.Y. (U.S.A.), 22-25 September, 1988. RNA: Catalysis, Splicing, Evolution. (pp. 119-126). Elsevier.
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conference paper
- Goldsmith, C. S., Lamb, T., Bennett, L., Finch, K., & BellPedersen, D. (2011). Defining a mechanism of circadian output in Neurospora crassa : temporal regulation of a MAP kinase pathway. The FASEB Journal. 944.1-944.1.
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de Paula, R. M., Vitalini, M. W., Gomer, R. H., Bell-Pedersen, D., & Press, C.
(2007).
Complexity of the Neurospora crassa Circadian Clock System: Multiple Loops and Oscillators. CLOCKS AND RHYTHMS.
345-351.
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institutional repository document
- Greenwell, B. J., Beytebiere, J. R., Lamb, T. M., Bell-Pedersen, D., Merlin, C., & Menet, J. S. (2020). Isoform-specific regulation of rhythmic gene expression by alternative polyadenylation