selected publications academic article Rizuan, A., Shenoy, J., Mohanty, P., Dos Passos, P., Mercado Ortiz, J. F., Bai, L., ... Fawzi, N. L. (2024). Structural details of helix-mediated TDP-43 C-terminal domain multimerization Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J. (2024). Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization. eLife. 12, rp90820. Rekhi, S., Garcia, C. G., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K. L., & Mittal, J. (2024). Expanding the molecular language of protein liquid-liquid phase separation. Nature Chemistry. 1-12. Johnson, C. N., Sojitra, K. A., Sohn, E. J., Moreno-Romero, A. K., Baudin, A., Xu, X., Mittal, J., & Libich, D. S. (2024). Insights into Molecular Diversity within the FUS/EWS/TAF15 Protein Family: Unraveling Phase Separation of the N-Terminal Low-Complexity Domain from RNA-Binding Protein EWS. Journal of the American Chemical Society. Sundaravadivelu Devarajan, D., Wang, J., Szaa-Mendyk, B., Rekhi, S., Nikoubashman, A., Kim, Y. C., & Mittal, J. (2024). Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations. Nature Communications. 15(1), 1912. Wake, N., Weng, S., Zheng, T., Wang, S., Kirilenko, V., Mittal, J., & Fawzi, N. L. (2024). Expanding the molecular grammar of polar residues and arginine in FUS prion-like domain phase separation and aggregation Welles, R. M., Sojitra, K. A., Garabedian, M. V., Xia, B., Wang, W., Guan, M., ... Good, M. C. (2024). Determinants that enable disordered protein assembly into discrete condensed phases. Nature Chemistry. Yan, X., Kuster, D., Mohanty, P., Nijssen, J., Pombo-Garca, K., Rizuan, A., ... Hyman, A. A. (2024). Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates Wang, J., Sundaravadivelu Devarajan, D., Kim, Y. C., Nikoubashman, A., & Mittal, J. (2024). Sequence-Dependent Conformational Transitions of Disordered Proteins During Condensation Mohanty, P., Rizuan, A., Kim, Y. C., Fawzi, N. L., & Mittal, J. (2023). A complex network of interdomain interactions underlies the conformational ensemble of monomeric TDP-43 and modulates its phase behavior. Protein Science. e4891. Mao, R., Minevich, B., McKeen, D., Chen, Q., Lu, F., Gang, O., & Mittal, J. (2023). Regulating phase behavior of nanoparticle assemblies through engineering of DNA-mediated isotropic interactions. Proceedings of the National Academy of Sciences of the United States of America. 120(52), e2302037120. Qian, L., Mohanty, P., Jayaraman, A., Mittal, J., & Zhu, X. (2023). Specific residues and conformational plasticity define the substrate specificity of short-chain dehydrogenases/reductases. Journal of Biological Chemistry. 105596-105596. Kapoor, U., Kim, Y. C., & Mittal, J. (2023). Coarse-Grained Models to Study Protein-DNA Interactions and Liquid-Liquid Phase Separation. Journal of Chemical Theory and Computation. Wang, J., Devarajan, D. S., Nikoubashman, A., & Mittal, J. (2023). Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins. ACS Macro Letters. 1472-1478. Chao, T., Rekhi, S., Mittal, J., & Tabor, D. (2023). Data-driven models for predicting intrinsically disordered protein polymer physics directly from composition or sequence. Molecular Systems Design && Engineering. 8(9), 1146-1155. Mohanty, P., Shenoy, J., Rizuan, A., Mercado-Ortiz, J. F., Fawzi, N. L., & Mittal, J. (2023). A synergy between site-specific and transient interactions drives the phase separation of a disordered, low-complexity domain. Proceedings of the National Academy of Sciences of the United States of America. 120(34), e2305625120. Szaa-Mendyk, B., Phan, T. M., Mohanty, P., & Mittal, J. (2023). Challenges in studying the liquid-to-solid phase transitions of proteins using computer simulations. Current Opinion in Chemical Biology. 75, 102333-102333. Devarajan, D. S., Wang, J., Nikoubashman, A., Kim, Y. C., & Mittal, J. (2023). Sequence-Dependent Material Properties of Biomolecular Condensates. 4(05-19), 2023.05.09.540038. Rekhi, S., Sundaravadivelu Devarajan, D., Howard, M. P., Kim, Y. C., Nikoubashman, A., & Mittal, J. (2023). Role of Strong Localized vs Weak Distributed Interactions in Disordered Protein Phase Separation. Journal of Physical Chemistry B. 127(17), 3829-3838. Welles, R. M., Sojitra, K. A., Garabedian, M. V., Xia, B., Regy, R. M., Gallagher, E. R., Mittal, J., & Good, M. C. (2023). Determinants of Disordered Protein Co-Assembly Into Discrete Condensed Phases. 4(03-21), 2023.03.10.532134. Kim, Y., & Mittal, J. (2023). Coarse-grained model for simulating protein complexes: Folded vs. disordered proteins. 122(3), 65a-65a. Roychowdhury, S., Das, B., Mohanty, P., Rizuan, A., Mittal, J., & Chattopadhyay, K. (2023). Cofactor-dependent structural transition of SOD1 modulates its ability to undergo liquid-liquid phase separation. 122(3), 353a-353a. Devarajan, D. S., Kim, Y., & Mittal, J. (2023). Dynamics and rheology of polyampholyte condensates. 122(3), 313a-313a. Rekhi, S., Garcia, C., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K., & Mittal, J. (2023). Elucidating residue level contributions to phase separation using a model polypeptide. 122(3), 206a-206a. Mohanty, P., Shenoy, J., Rizuan, A., Jovic, N., Mercado-Ortiz, J., Fawzi, N. L., & Mittal, J. (2023). Hydrophobic residues in disordered and helical regions mediate the oligomerization and phase separation of TDP-43 C-terminal domain. 122(3), 208a-208a. Kapoor, U., Kim, Y., & Mittal, J. (2023). Molecular features underlying phase separation of protein-nucleic acid condensates revealed by a new coarse-grained DNA model. 122(3), 171a-171a. Phan, T. M., Kapoor, U., Debelouchina, G. T., & Mittal, J. (2023). Molecular insights into phase separation of HP1 isoforms using coarse-grained and atomistic simulations. 122(3), 208a-208a. Rizuan, A., Mohanty, P., Fawzi, N. L., & Mittal, J. (2023). Multiscale simulations of TDP-43 full-length uncover molecular determinants of its phase separation beyond N/C-terminal oligomerization. 122(3), 209a-209a. Sojitra, K. A., Johnson, C., Sohn, E., Libich, D., & Mittal, J. (2023). Unraveling the phase separation of EWS low complexity domain using molecular dynamics simulations. 122(3), 346a-346a. Das, B., Roychowdhury, S., Mohanty, P., Rizuan, A., Chakraborty, J., Mittal, J., & Chattopadhyay, K. (2023). A Zn-dependent structural transition of SOD1 modulates its ability to undergo phase separation. 42(2), e111185. Mittal, J. (2023). Abstract 2520: Using computer simulations to uncover the molecular grammar of biomolecular phase separation. Journal of Biological Chemistry. 299(3), s520-103969. Her, C., Phan, T. M., Jovic, N., Kapoor, U., Ackermann, B. E., Rizuan, A., ... Debelouchina, G. T. (2022). Molecular interactions underlying the phase separation of HP1: role of phosphorylation, ligandand nucleic acid binding. 50(22), 12702-12722. Mohanty, P., Kapoor, U., Sundaravadivelu Devarajan, D., Phan, T. M., Rizuan, A., & Mittal, J. (2022). Principles Governing the Phase Separation of Multidomain Proteins. Biochemistry. 61(22), 2443-2455. Devarajan, D. S., Rekhi, S., Nikoubashman, A., Kim, Y. C., Howard, M. P., & Mittal, J. (2022). Effect of Charge Distribution on the Dynamics of Polyampholytic Disordered Proteins. MACROMOLECULES. 55(20), 8987-8997. Rizuan, A., Jovic, N., Phan, T. M., Kim, Y. C., & Mittal, J. (2022). Developing Bonded Potentials for a Coarse-Grained Model of Intrinsically Disordered Proteins. Journal of Chemical Information and Modeling. 62(18), 4474-4485. Mao, R., O'Leary, J., Mesbah, A., & Mittal, J. (2022). A Deep Learning Framework Discovers Compositional Order and Self-Assembly Pathways in Binary Colloidal Mixtures. JACS Au. 2(8), 1818-1828. Liu, A. P., Appel, E. A., Ashby, P. D., Baker, B. M., Franco, E., Gu, L., ... Chaudhuri, O. (2022). The living interface between synthetic biology and biomaterial design. Nature Materials. 21(4), 390-397. Ingolfsson, H. I., Rizuan, A., Mohanty, P., Mittal, J., & Berry, J. (2022). Multiscale simulations reveal molecular dynamics of TDP-43 assemblies. Biophysical Journal. 121(3), 55-55. Chatterjee, S., Kan, Y., Brzezinski, M., Koynov, K., Regy, R. M., Murthy, A. C., ... Parekh, S. H. (2022). Reversible Kinetic Trapping of FUS Biomolecular Condensates. Advanced Science. 9(4), e2104247-2104247. Kelley, F. M., Favetta, B., Regy, R. M., Mittal, J., & Schuster, B. S. (2021). Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants. Proceedings of the National Academy of Sciences of the United States of America. 118(51), e2109967118. Murthy, A. C., Tang, W. S., Jovic, N., Janke, A. M., Seo, D. H., Perdikari, T. M., Mittal, J., & Fawzi, N. L. (2021). Molecular interactions contributing to FUS SYGQ LC-RGG phase separation and co-partitioning with RNA polymerase II heptads. Nature Structural and Molecular Biology. 28(11), 923-935. Fawzi, N. L., Parekh, S. H., & Mittal, J. (2021). Biophysical studies of phase separation integrating experimental and computational methods. Current Opinion in Structural Biology. 70, 78-86. Garcia Garcia, C., Patkar, S. S., Jovic, N., Mittal, J., & Kiick, K. L. (2021). Alteration of Microstructure in Biopolymeric Hydrogels via Compositional Modification of Resilin-Like Polypeptides. ACS Biomaterial Science and Engineering. 7(9), 4244-4257. Regy, R. M., Thompson, J., Kim, Y. C., & Mittal, J. (2021). Improved coarse-grained model for studying sequence dependent phase separation of disordered proteins. Protein Science. 30(7), 1371-1379. Bock, A. S., Murthy, A. C., Tang, W. S., Jovic, N., Shewmaker, F., Mittal, J., & Fawzi, N. L. (2021). N-terminal acetylation modestly enhances phase separation and reduces aggregation of the low-complexity domain of RNA-binding protein fused in sarcoma. Protein Science. 30(7), 1337-1349. Mao, R., Pretti, E., & Mittal, J. (2021). Temperature-Controlled Reconfigurable Nanoparticle Binary Superlattices. ACS Nano. 15(5), 8466-8473. Perdikari, T. M., Jovic, N., Dignon, G. L., Kim, Y. C., Fawzi, N. L., & Mittal, J. (2021). A predictive coarse-grained model for position-specific effects of post-translational modifications. Biophysical Journal. 120(7), 1187-1197. Schuster, B. S., Regy, R. M., Dolan, E. M., Kanchi Ranganath, A., Jovic, N., Khare, S. D., Shi, Z., & Mittal, J. (2021). Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties. Journal of Physical Chemistry B. 125(14), 3441-3451. Shea, J., Best, R. B., & Mittal, J. (2021). Physics-based computational and theoretical approaches to intrinsically disordered proteins. Current Opinion in Structural Biology. 67, 219-225. Zheng, W., Dignon, G., Kim, Y., Best, R. B., & Mittal, J. (2021). Computational Models for Liquid-Liquid Phase Separation of Intrinsically Disordered Proteins. Biophysical Journal. 120(3), 5A-5A. Ryan, V. H., Perdikari, T. M., Naik, M. T., Saueressig, C. F., Lins, J., Dignon, G. L., ... Fawzi, N. L. (2021). Tyrosine phosphorylation regulates hnRNPA2 granule protein partitioning and reduces neurodegeneration. EMBO Journal. 40(3), e105001. O'Leary, J., Mao, R., Pretti, E. J., Paulson, J. A., Mittal, J., & Mesbah, A. (2021). Deep learning for characterizing the self-assembly of three-dimensional colloidal systems. SOFT MATTER. 17(4), 989-999. Zheng, W., Dignon, G. L., Jovic, N., Xu, X., Regy, R. M., Fawzi, N. L., ... Mittal, J. (2020). Molecular Details of Protein Condensates Probed by Microsecond Long Atomistic Simulations. Journal of Physical Chemistry B. 124(51), 11671-11679. Mao, R., & Mittal, J. (2020). Self-Assembly of DNA-Functionalized Nanoparticles Guided by Binding Kinetics. Journal of Physical Chemistry B. 124(51), 11593-11599. Regy, R. M., Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J. (2020). Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations. Nucleic Acids Research (NAR). 48(22), 12593-12603. Tang, W. S., Fawzi, N. L., & Mittal, J. (2020). Refining All-Atom Protein Force Fields for Polar-Rich, Prion-like, Low-Complexity Intrinsically Disordered Proteins. Journal of Physical Chemistry B. 124(43), 9505-9512. Mammen Regy, R., & Mittal, J. (2020). Living cells as test tubes. Nature Chemical Biology. 16(9), 934-935. Rzepa, C., Siderius, D. W., Hatch, H. W., Shen, V. K., Rangarajan, S., & Mittal, J. (2020). Computational Investigation of Correlations in Adsorbate Entropy for Pure-Silica Zeolite Adsorbents. 124(30), 16350-16361. Zheng, W., Dignon, G., Brown, M., Kim, Y. C., & Mittal, J. (2020). Hydropathy Patterning Complements Charge Patterning to Describe Conformational Preferences of Disordered Proteins. Journal of Physical Chemistry Letters. 11(9), 3408-3415. Schuster, B. S., Dignon, G. L., Tang, W. S., Kelley, F. M., Ranganath, A. K., Jahnke, C. N., ... Mittal, J. (2020). Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior. Proceedings of the National Academy of Sciences of the United States of America. 117(21), 11421-11431. Mahynski, N. A., Mao, R., Pretti, E., Shen, V. K., & Mittal, J. (2020). Grand canonical inverse design of multicomponent colloidal crystals. SOFT MATTER. 16(13), 3187-3194. Pretti, E., Shen, V. K., Mittal, J., & Mahynski, N. A. (2020). Symmetry-Based Crystal Structure Enumeration in Two Dimensions. Journal of Physical Chemistry A. 124(16), 3276-3285. Rani, L., Mittal, J., & Mallajosyula, S. S. (2020). Effect of Phosphorylation and O-GlcNAcylation on Proline-Rich Domains of Tau. Journal of Physical Chemistry B. 124(10), 1909-1918. Conicella, A. E., Dignon, G. L., Zerze, G. H., Schmidt, H. B., D'Ordine, A. M., Kim, Y. C., ... Fawzi, N. L. (2020). TDP-43 -helical structure tunes liquid-liquid phase separation and function. Proceedings of the National Academy of Sciences of the United States of America. 117(11), 5883-5894. Conicella, A. E., Dignon, G., Zerze, G. H., Schmidt, B., D'Ordine, A. M., Kim, Y., ... Fawzi, N. L. (2020). Alpha-Helical Structure in TDP-43 Tunes Liquid-liquid Phase Separation and Cellular Function. Biophysical Journal. 118(3), 5A-6A. Zheng, W., Dignon, G., Brown, M., & Mittal, J. (2020). Impact of Hydrophobic Patterning on Conformational Ensemble of Disordered Proteins. Biophysical Journal. 118(3), 214A-214A. Kunkel, J., Kodis, G., Sutto-Ortiz, P., Bignon, C., Jovic, N., Mittal, J., Longhi, S., & Vaiana, S. M. (2020). Internal Dynamics of the Measles Virus N-TAIL Protein by Photo-Induced Electron Transfer Experiments and Molecular Simulations. Biophysical Journal. 118(3), 541A-541A. Kim, Y., Jovic, N., & Mittal, J. (2020). Secondary Structure Prediction for Intrinsically Disordered Proteins. Biophysical Journal. 118(3), 213A-213A. Regy, R. M., Dignon, G. L., Kim, Y., & Mittal, J. (2020). Studying RNA Modulated Protein Liquid-Liquid Phase Separation using Coarse-Grained Models. Biophysical Journal. 118(3), 537A-537A. Pretti, E., Zerze, H., Song, M., Ding, Y., Mao, R., & Mittal, J. (2019). Size-dependent thermodynamic structural selection in colloidal crystallization. Science Advances. 5(9), eaaw5912. Pretti, E., & Mittal, J. (2019). Extension of the Einstein molecule method for solid free energy calculation to non-periodic and semi-periodic systems. Journal of Chemical Physics. 151(5), 054105-054105. Sanyal, T., Mittal, J., & Shell, M. S. (2019). A hybrid, bottom-up, structurally accurate, Go-like coarse-grained protein model. Journal of Chemical Physics. 151(4), 044111-044111. Murthy, A. C., Dignon, G. L., Kan, Y., Zerze, G. H., Parekh, S. H., Mittal, J., & Fawzi, N. L. (2019). Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain. Nature Structural and Molecular Biology. 26(7), 637-648. Heller, D. A., Baker, H., Budhathoki-Uprety, J., Cupo, C., Harvey, J., Jena, P. V., ... Zheng, M. (2019). (Invited) Carbon Nanotube Photoluminescence Solvatochromism in Biomedicine: Spectroscopy, Imaging, and Modulation. ECS Meeting Abstracts. MA2019-01(9), 721-721. Zerze, G. H., Zheng, W., Best, R. B., & Mittal, J. (2019). Evolution of All-Atom Protein Force Fields to Improve Local and Global Properties. Journal of Physical Chemistry Letters. 10(9), 2227-2234. Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J. (2019). Temperature-Controlled Liquid-Liquid Phase Separation of Disordered Proteins. ACS Central Science. 5(5), 821-830. Mahynski, N. A., Pretti, E., Shen, V. K., & Mittal, J. (2019). Using symmetry to elucidate the importance of stoichiometry in colloidal crystal assembly. Nature Communications. 10(1), 2028. Dignon, G. L., Zheng, W., & Mittal, J. (2019). Simulation methods for liquid-liquid phase separation of disordered proteins. Current Opinion in Chemical Engineering. 23, 92-98. Maula, T. A., Hatch, H. W., Shen, V. K., Rangarajan, S., & Mittal, J. (2019). Designing Molecular Building Blocks for the Self-assembly of Complex Porous Networks. Molecular Systems Design && Engineering. 4(3), 644-653. Galassi, T. V., Jena, P. V., Shah, J., Ao, G., Molitor, E., Bram, Y., ... Heller, D. A. (2018). An optical nanoreporter of endolysosomal lipid accumulation reveals enduring effects of diet on hepatic macrophages in vivo. Science Translational Medicine. 10(461), eaar2680. Dignon, G. L., Zheng, W., Best, R. B., Kim, Y. C., & Mittal, J. (2018). Relation between single-molecule properties and phase behavior of intrinsically disordered proteins. Proceedings of the National Academy of Sciences of the United States of America. 115(40), 9929-9934. Pretti, E., Zerze, H., Song, M., Ding, Y., Mahynski, N. A., Hatch, H. W., Shen, V. K., & Mittal, J. (2018). Assembly of three-dimensional binary superlattices from multi-flavored particles. SOFT MATTER. 14(30), 6303-6312. Horan, B. G., Zerze, G. H., Kim, Y. C., Vavylonis, D., & Mittal, J. (2018). Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer. FEBS Letters. 592(11), 1804-1816. Harvey, J. D., Zerze, G. H., Tully, K. M., Mittal, J., & Heller, D. A. (2018). Electrostatic Screening Modulates Analyte Binding and Emission of Carbon Nanotubes. Journal of Physical Chemistry C. 122(19), 10592-10599. Das, P., Matysiak, S., & Mittal, J. (2018). Looking at the Disordered Proteins through the Computational Microscope. ACS Central Science. 4(5), 534-542. Janke, A. M., Seo, D. H., Rahmanian, V., Conicella, A. E., Mathews, K. L., Burke, K. A., Mittal, J., & Fawzi, N. L. (2018). Lysines in the RNA Polymerase II C-Terminal Domain Contribute to TAF15 Fibril Recruitment. Biochemistry. 57(17), 2549-2563. Zheng, W., Zerze, G. H., Borgia, A., Mittal, J., Schuler, B., & Best, R. B. (2018). Inferring properties of disordered chains from FRET transfer efficiencies. Journal of Chemical Physics. 148(12), 123329-123329. Ryan, V. H., Dignon, G. L., Zerze, G. H., Chabata, C. V., Silva, R., Conicella, A. E., ... Fawzi, N. L. (2018). Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation. Molecular Cell. 69(3), 465-479.e7. Song, M., Ding, Y., Zerze, H., Snyder, M. A., & Mittal, J. (2018). Binary Superlattice Design by Controlling DNA-Mediated Interactions. Langmuir. 34(3), 991-998. Dignon, G. L., Zheng, W., Kim, Y. C., Best, R. B., & Mittal, J. (2018). Sequence determinants of protein phase behavior from a coarse-grained model. PLoS Computational Biology. 14(1), e1005941-e1005941. Jena, P. V., Roxbury, D., Galassi, T. V., Akkari, L., Horoszko, C. P., Iaea, D. B., ... Heller, D. A. (2017). A Carbon Nanotube Optical Reporter Maps Endolysosomal Lipid Flux. ACS Nano. 11(11), 10689-10703. Monahan, Z., Ryan, V. H., Janke, A. M., Burke, K. A., Rhoads, S. N., Zerze, G. H., ... Fawzi, N. L. (2017). Phosphorylation of the FUS low-complexity domain disrupts phase separation, aggregation, and toxicity. EMBO Journal. 36(20), 2951-2967. Dignon, G. L., Zerze, G. H., & Mittal, J. (2017). Interplay Between Membrane Composition and Structural Stability of Membrane-Bound hIAPP. Journal of Physical Chemistry B. 121(37), 8661-8668. Mahynski, N. A., Zerze, H., Hatch, H. W., Shen, V. K., & Mittal, J. (2017). Assembly of multi-flavored two-dimensional colloidal crystals. SOFT MATTER. 13(32), 5397-5408. Jena, P. V., Mittal, J., Heller, D. A., Safaee, M., & Roxbury, D. (2017). Experimental and Computational Approaches to Explore the the Mechanisms of Carbon Nanotube Biosensing. ECS Meeting Abstracts. MA2017-01(8), 642-642. Modi, T., Zerze, G. H., Mittal, J., Vaiana, S. M., & Ozkan, S. B. (2017). Intrinsically Disordered Protein Dynamics Uncovered through Dynamic Flexibility Index (DFI) Analysis. Biophysical Journal. 112(3), 208a-209a. Harvey, J. D., Jena, P. V., Baker, H. A., Zerze, G. H., Williams, R. M., Galassi, T. V., ... Heller, D. A. (2017). A Carbon Nanotube Reporter of miRNA Hybridization Events In Vivo. 1(4), 0041. Song, M., Ding, Y., Snyder, M. A., & Mittal, J. (2016). Effect of Nonionic Surfactant on Association/Dissociation Transition of DNA-Functionalized Colloids. Langmuir. 32(39), 10017-10025. Conicella, A. E., Zerze, G. H., Mittal, J., & Fawzi, N. L. (2016). ALS Mutations Disrupt Phase Separation Mediated by alpha-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. Structure. 24(9), 1537-1549. Miller, C. M., Kim, Y. C., & Mittal, J. (2016). Protein Composition Determines the Effect of Crowding on the Properties of Disordered Proteins. Biophysical Journal. 111(1), 28-37. Hatch, H. W., Yang, S., Mittal, J., & Shen, V. K. (2016). Self-assembly of trimer colloids: effect of shape and interaction range. SOFT MATTER. 12(18), 4170-4179. Levine, Z. A., Rapp, M. V., Wei, W., Mullen, R. G., Wu, C., Zerze, G. H., ... Shea, J. (2016). Surface force measurements and simulations of mussel-derived peptide adhesives on wet organic surfaces. Proceedings of the National Academy of Sciences of the United States of America. 113(16), 4332-4337. Zerze, G. H., Mittal, J., & Best, R. B. (2016). Diffusive Dynamics of Contact Formation in Disordered Polypeptides. 116(6), 068102. Zerze, G. H., & Mittal, J. (2015). Effect of O-Linked Glycosylation on the Equilibrium Structural Ensemble of Intrinsically Disordered Polypeptides. Journal of Physical Chemistry B. 119(51), 15583-15592. Zerze, G. H., Best, R. B., & Mittal, J. (2015). Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations. Journal of Physical Chemistry B. 119(46), 14622-14630. Zerze, G. H., Mullen, R. G., Levine, Z. A., Shea, J., & Mittal, J. (2015). To What Extent Does Surface Hydrophobicity Dictate Peptide Folding and Stability near Surfaces?. Langmuir. 31(44), 12223-12230. Ding, Y., & Mittal, J. (2015). Equilibrium and nonequilibrium dynamics of soft sphere fluids. SOFT MATTER. 11(26), 5274-5281. Zerze, G. H., Uz, B., & Mittal, J. (2015). Folding thermodynamics of -hairpins studied by replica-exchange molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics. 83(7), 1307-1315. Zerze, G. H., Miller, C. M., Granata, D., & Mittal, J. (2015). Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics. Journal of Chemical Theory and Computation. 11(6), 2776-2782. Hatch, H. W., Mittal, J., & Shen, V. K. (2015). Computational study of trimer self-assembly and fluid phase behavior. Journal of Chemical Physics. 142(16), 164901-164901. Best, R. B., Zheng, W., & Mittal, J. (2015). Correction to Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association. Journal of Chemical Theory and Computation. 11(4), 1978-1978. Best, R. B., Miller, C., & Mittal, J. (2014). Role of solvation in pressure-induced helix stabilization. Journal of Chemical Physics. 141(22), 22D522-22D522. Best, R. B., Zheng, W., & Mittal, J. (2014). Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association. Journal of Chemical Theory and Computation. 10(11), 5113-5124. Miller, C. M., Brown, A. C., & Mittal, J. (2014). Disorder in cholesterol-binding functionality of CRAC peptides: a molecular dynamics study. Journal of Physical Chemistry B. 118(46), 13169-13174. Ding, Y., & Mittal, J. (2014). Insights into DNA-mediated interparticle interactions from a coarse-grained model. Journal of Chemical Physics. 141(18), 184901-184901. Kim, Y. C., Bhattacharya, A., & Mittal, J. (2014). Macromolecular crowding effects on coupled folding and binding. Journal of Physical Chemistry B. 118(44), 12621-12629. Moskowitz, I., Snyder, M. A., & Mittal, J. (2014). Water transport through functionalized nanotubes with tunable hydrophobicity. Journal of Chemical Physics. 141(18), 18C532-18C532. Song, M., Snyder, M. A., & Mittal, J. (2014). Effect of molecular structure on fluid transport through carbon nanotubes. 112(20), 2658-2664. Zerze, G. H., Best, R. B., & Mittal, J. (2014). Modest influence of FRET chromophores on the properties of unfolded proteins. Biophysical Journal. 107(7), 1654-1660. Iliafar, S., Mittal, J., Vezenov, D., & Jagota, A. (2014). Interaction of single-stranded DNA with curved carbon nanotube is much stronger than with flat graphite. Journal of the American Chemical Society. 136(37), 12947-12957. Miller, C., Zerze, G. H., & Mittal, J. (2014). Correction to Molecular Simulations Indicate Marked Differences in the Structure of Amylin Mutants, Correlated with Known Aggregation Propensity. Journal of Physical Chemistry B. 118(29), 8914-8915. Wuttke, R., Hofmann, H., Nettels, D., Borgia, M. B., Mittal, J., Best, R. B., & Schuler, B. (2014). Temperature-dependent solvation modulates the dimensions of disordered proteins. Proceedings of the National Academy of Sciences of the United States of America. 111(14), 5213-5218. Shankar, A., Mittal, J., & Jagota, A. (2014). Binding between DNA and carbon nanotubes strongly depends upon sequence and chirality. Langmuir. 30(11), 3176-3183. Miller, C., Zerze, G. H., & Mittal, J. (2013). Molecular simulations indicate marked differences in the structure of amylin mutants, correlated with known aggregation propensity. Journal of Physical Chemistry B. 117(50), 16066-16075. Roxbury, D., Zhang, S., Mittal, J., Degrado, W. F., & Jagota, A. (2013). Structural Stability and Binding Strength of a Designed Peptide-Carbon Nanotube Hybrid. Journal of Physical Chemistry C. 117(49), 26255-26261. Zerze, H., Mittal, J., & McHugh, A. J. (2013). Ab Initio Crystallization of Alkanes: Structure and Kinetics of Nuclei Formation. MACROMOLECULES. 46(22), 9151-9157. Qin, S., Mittal, J., & Zhou, H. (2013). Folding free energy surfaces of three small proteins under crowding: validation of the postprocessing method by direct simulation. Physical Biology. 10(4), 045001-045001. Bhattacharya, A., Kim, Y. C., & Mittal, J. (2013). Protein-protein interactions in a crowded environment. Biophysical Reviews. 5(2), 99-108. Kim, Y. C., & Mittal, J. (2013). Crowding induced entropy-enthalpy compensation in protein association equilibria. 110(20), 208102. De Sancho, D., Mittal, J., & Best, R. B. (2013). Folding Kinetics and Unfolded State Dynamics of the GB1 Hairpin from Molecular Simulation. Journal of Chemical Theory and Computation. 9(3), 1743-1753. Roxbury, D., Jagota, A., & Mittal, J. (2013). Structural characteristics of oligomeric DNA strands adsorbed onto single-walled carbon nanotubes. Journal of Physical Chemistry B. 117(1), 132-140. Mittal, J., Yoo, T. H., Georgiou, G., & Truskett, T. M. (2013). Structural ensemble of an intrinsically disordered polypeptide. Journal of Physical Chemistry B. 117(1), 118-124. Shankar, A., Jagota, A., & Mittal, J. (2012). DNA base dimers are stabilized by hydrogen-bonding interactions including non-Watson-Crick pairing near graphite surfaces. Journal of Physical Chemistry B. 116(40), 12088-12094. Best, R. B., Mittal, J., Feig, M., & MacKerell, A. D. (2012). Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of -helix and -hairpin formation. Biophysical Journal. 103(5), 1045-1051. Best, R. B., Zhu, X., Shim, J., Lopes, P., Mittal, J., Feig, M., & Mackerell, A. D. (2012). Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone , and side-chain (1) and (2) dihedral angles. Journal of Chemical Theory and Computation. 8(9), 3257-3273. Bhattacharya, A., Best, R. B., & Mittal, J. (2012). Smoothing of the GB1 hairpin folding landscape by interfacial confinement. Biophysical Journal. 103(3), 596-600. Mittal, J., & Hummer, G. (2012). Pair diffusion, hydrodynamic interactions, and available volume in dense fluids. Journal of Chemical Physics. 137(3), 034110-034110. Roxbury, D., Mittal, J., & Jagota, A. (2012). Molecular-basis of single-walled carbon nanotube recognition by single-stranded DNA. Nano Letters. 12(3), 1464-1469. Best, R. B., de Sancho, D., & Mittal, J. (2012). Residue-specific -helix propensities from molecular simulation. Biophysical Journal. 102(6), 1462-1467. Melillo, M., Zhu, F., Snyder, M. A., & Mittal, J. (2011). Water Transport through Nanotubes with Varying Interaction Strength between Tube Wall and Water. Journal of Physical Chemistry Letters. 2(23), 2978-2983. Roxbury, D., Jagota, A., & Mittal, J. (2011). Sequence-specific self-stitching motif of short single-stranded DNA on a single-walled carbon nanotube. Journal of the American Chemical Society. 133(34), 13545-13550. Best, R. B., & Mittal, J. (2011). Microscopic events in -hairpin folding from alternative unfolded ensembles. Proceedings of the National Academy of Sciences of the United States of America. 108(27), 11087-11092. Best, R. B., & Mittal, J. (2011). Free-energy landscape of the GB1 hairpin in all-atom explicit solvent simulations with different force fields: Similarities and differences. Proteins: Structure, Function, and Bioinformatics. 79(4), 1318-1328. Rosen, J., Kim, Y. C., & Mittal, J. (2011). Modest protein-crowder attractive interactions can counteract enhancement of protein association by intermolecular excluded volume interactions. Journal of Physical Chemistry B. 115(11), 2683-2689. Rosen, J., Kim, Y. C., & Mittal, J. (2011). Macromolecular Crowding Effects on Multiprotein Binding Equilibria: Molecular Simulation and Theory. Biophysical Journal. 100(3), 614a-614a. Kim, Y. C., Best, R. B., & Mittal, J. (2010). Macromolecular crowding effects on protein-protein binding affinity and specificity. Journal of Chemical Physics. 133(20), 205101-205101. Best, R. B., & Mittal, J. (2010). Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse. Journal of Physical Chemistry B. 114(46), 14916-14923. Mittal, J., & Best, R. B. (2010). Tackling force-field bias in protein folding simulations: folding of Villin HP35 and Pin WW domains in explicit water. Biophysical Journal. 99(3), L26-L28. Best, R. B., & Mittal, J. (2010). Balance between alpha and beta structures in ab initio protein folding. Journal of Physical Chemistry B. 114(26), 8790-8798. Mittal, J., Errington, J. R., & Truskett, T. M. (2010). Erratum: Relationship between thermodynamics and dynamics of supercooled liquids [J. Chem. Phys. 125, 076102 (2006)]. Journal of Chemical Physics. 132(16), 169904-169904. Mittal, J., & Best, R. B. (2010). Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders. Biophysical Journal. 98(2), 315-320. Mittal, J., & Hummer, G. (2010). Interfacial thermodynamics of confined water near molecularly rough surfaces. Faraday Discussions. 146(0), 341-352. Mittal, J. (2009). Using compressibility factor as a predictor of confined hard-sphere fluid dynamics. Journal of Physical Chemistry B. 113(42), 13800-13804. Goel, G., Krekelberg, W. P., Pond, M. J., Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M. (2009). Available states and available space: static properties that predict self-diffusivity of confined fluids. Journal of Statistical Mechanics: Theory and Experiment. 2009(04), p04006-P04006. Krekelberg, W. P., Kumar, T., Mittal, J., Errington, J. R., & Truskett, T. M. (2009). Anomalous structure and dynamics of the Gaussian-core fluid. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. 79(3 Pt 1), 031203. Mittal, J., & Hummer, G. (2008). Static and dynamic correlations in water at hydrophobic interfaces. Proceedings of the National Academy of Sciences of the United States of America. 105(51), 20130-20135. Mittal, J., & Best, R. B. (2008). Thermodynamics and kinetics of protein folding under confinement. Proceedings of the National Academy of Sciences of the United States of America. 105(51), 20233-20238. Mittal, J., Truskett, T. M., Errington, J. R., & Hummer, G. (2008). Layering and position-dependent diffusive dynamics of confined fluids. Physical Review Letters. 100(14), 145901. Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M. (2008). Structural anomalies of fluids: origins in second and higher coordination shells. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. 77(4 Pt 1), 041201. Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M. (2007). Confinement, entropy, and single-particle dynamics of equilibrium hard-sphere mixtures. Journal of Chemical Physics. 127(15), 154513-154513. Mittal, J., Errington, J. R., & Truskett, T. M. (2007). Relationships between self-diffusivity, packing fraction, and excess entropy in simple bulk and confined fluids. Journal of Physical Chemistry B. 111(34), 10054-10063. Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M. (2007). How short-range attractions impact the structural order, self-diffusivity, and viscosity of a fluid. Journal of Chemical Physics. 127(4), 044502-044502. Mittal, J., Errington, J. R., & Truskett, T. M. (2007). Does confining the hard-sphere fluid between hard walls change its average properties?. Journal of Chemical Physics. 126(24), 244708-244708. Errington, J. R., Truskett, T. M., & Mittal, J. (2007). Erratum: Excess-entropy-based anomalies for a waterlike fluid [J. Chem. Phys. 125, 244502 (2006)]. Journal of Chemical Physics. 126(18), 189901-189901. Mittal, J., Errington, J. R., & Truskett, T. M. (2007). Quantitative Link between Single-Particle Dynamics and Static Structure of Supercooled Liquids. 111(19), 5531-5531. Errington, J. R., Truskett, T. M., & Mittal, J. (2006). Excess-entropy-based anomalies for a waterlike fluid. Journal of Chemical Physics. 125(24), 244502-244502. Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Using available volume to predict fluid diffusivity in random media. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. 74(4 Pt 1), 040102. Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Quantitative link between single-particle dynamics and static structure of supercooled liquids. Journal of Physical Chemistry B. 110(37), 18147-18150. Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Relationship between thermodynamics and dynamics of supercooled liquids. Journal of Chemical Physics. 125(7), 076102-076102. Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Thermodynamics predicts how confinement modifies the dynamics of the equilibrium hard-sphere fluid. 96(17), 177804. Mittal, J., Shah, P., & Truskett, T. M. (2004). Using Energy Landscapes To Predict the Properties of Thin Films. 108(51), 19769-19779. Sharma, A., & Mittal, J. (2003). Erratum: Instability of Thin Liquid Films by Density Variations: A New Mechanism that Mimics Spinodal Dewetting [Phys. Rev. Lett.PRLTAO0031-9007 89, 186101 (2002)]. Physical Review Letters. 90(25), 259901. Sharma, A., Mittal, J., & Verma, R. (2002). Instability and Dewetting of Thin Films Induced by Density Variations. 18(26), 10213-10220. Sharma, A., & Mittal, J. (2002). Instability of thin liquid films by density variations: a new mechanism that mimics spinodal dewetting. 89(18), 186101. Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J. Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization. eLife. 12. Devarajan, D. S., & Mittal, J. Sequence-encoded Spatiotemporal Dependence of Viscoelasticity of Protein Condensates Using Computational Microrheology. 2024.08.13.607792. chapter Mammen Regy, R., Zheng, W., & Mittal, J. (2021). Using a sequence-specific coarse-grained model for studying protein liquid-liquid phase separation. METHODS IN ENZYMOLOGY. LIQUID-LIQUID PHASE COEXISTENCE AND MEMBRANELESS ORGANELLES. (pp. 1-17). Elsevier. Dignon, G. L., Best, R. B., & Mittal, J. (2020). Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties. Annual Review of Physical Chemistry. ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 71. (pp. 53-75). Annual Reviews. Mittal, J., Krekelberg, W. P., Errington, J. R., & Truskett, T. M. (2007). Computing Free Volume, Structural Order, and Entropy of Liquids and Glasses. Reviews in Computational Chemistry. Reviews in Computational Chemistry. (pp. 125-158). Wiley. conference paper Pretti, E., Mao, R., & Mittal, J. (2019). Modelling and simulation of DNA-mediated self-assembly for superlattice design. Molecular Simulation. 1203-1210. Dignon, G. L., Zheng, W., Kim, Y., & Mittal, J. (2019). A High-Throughput Approach to Phase Separation of Disordered Proteins. Biophysical Journal. 350A-350A. Kim, Y., Maula, T. A., & Mittal, J. (2019). Accurate Estimation of Protein-Binding Kinetics using Markov State Models. Biophysical Journal. 303A-303A. Horan, B. G., Vavylonis, D., & Mittal, J. (2019). Elucidating Steps in Actin Polymerization and Nucleation using a Coarse-Grained Model of Multiprotein Complex Formation. Biophysical Journal. 551A-552A. Mittal, J. (2019). Identifying Sequence-Determinants of Protein Liquid-Liquid Phase Separation. Biophysical Journal. 4A-4A. Schuster, B. S., Dignon, G., Jahnke, C., Good, M. C., Hammer, D. A., & Mittal, J. (2019). Sequence Determinants of Protein Phase Separation of the Intrinsically Disordered RGG Domain from LAF-1. Biophysical Journal. 453A-454A. Zheng, W., Dignon, G., Brown, M., Best, R., Kim, Y., & Mittal, J. (2019). Models for liquid-liquid phase separation of disordered proteins. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Dignon, G. L., Zheng, W., Kim, Y. C., Mittal, J., & Best, R. (2018). Coarse-Grained Simulations of Intrinsically Disordered Proteins in the Context of Liquid-Liquid Phase Separation. Biophysical Journal. 431A-432A. Zheng, W., Zerze, G., Borgia, A., Mittal, J., Schuler, B., & Best, R. B. (2018). Inferring Properties of Disordered Chains From FRET Transfer Efficiencies. Biophysical Journal. 367A-367A. Kim, Y., & Mittal, J. (2018). Knowledge-Based Coarse-Grained Model for Simulating Multi-protein Complexes. Biophysical Journal. 59A-60A. Horan, B. G., Zerze, G., Dignon, G. L., Kim, Y. C., Vavylonis, D., & Mittal, J. (2018). Multiscale Model of the Formin Homology 1 Domain Illustrates its Role in Regulation of Actin Polymerization. Biophysical Journal. 144A-144A. Heller, D. A., Harvey, J. D., Jena, P. V., Williams, R. M., Galassi, T. V., Baker, H. A., ... Mittal, J. (2017). Abstract LB-222: A nanoscale optical reporter implant for miRNA biomarkers in vivo. Cancer Research. lb-222-lb-222. Dignon, G. L., Zheng, W., Best, R., & Mittal, J. (2017). A Novel Coarse-Grained Model to Study Liquid-Liquid Phase Separation of Disordered Proteins. Biophysical Journal. 200A-200A. Kim, Y., & Mittal, J. (2017). Crowding Induced Coil-Globule Transitions of Intrinsically Disordered Proteins. Biophysical Journal. 511A-511A. Modi, T., Zerze, G. H., Mittal, J., Vaiana, S. M., & Ozkan, S. B. (2017). Intrinsically Disordered Protein Dynamics Uncovered through Dynamic Flexibility Index (DFI) Analysis. Biophysical Journal. 209A-209A. Conicella, A. E., Zerze, G. H., Mittal, J., & Fawzi, N. L. (2016). ALS Mutations Disrupt Phase Separation Mediated by -Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 1537-1549. Zerze, G., Best, R. B., & Mittal, J. (2016). Dynamics of Contact Formation in Disordered Polypeptides. Biophysical Journal. 557A-557A. Kim, Y., & Mittal, J. (2016). Quantifying Crowding Effects on Transient Encounter Complex Formation during Protein Binding. Biophysical Journal. 386A-386A. Mittal, J. (2016). Structure and dynamics of intrinsically disordered proteins from a physics-based model. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2a-2a. Zheng, W., Zerze, G., Borgia, A., Borgia, M., Hofmann, H., Schuler, B., Mittal, J., & Best, R. (2016). All-atom models for intrinsically disordered proteins: Structure, dynamics and experimental interpretation. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Mittal, J. (2016). Atomic-Resolution In-Cell NMR Analysis of Alpha-Synuclein in Mammalian Cells Reveals Disordered Monomer. Biophysical Journal. 2A-2A. Granata, D., Zerze, G., Mittal, J., Vendruscolo, M., & Laio, A. (2016). Characterizing the free energy landscape of intrinsically disordered proteins by metadynamics simulation and experiments. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Zerze, G., Vaiana, S., & Mittal, J. (2016). Dynamic and structural characterization of intrinsically disordered peptides via molecular simulations. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Kim, Y., Miller, C., & Mittal, J. (2016). Macromolecular crowding effects on the intrinsically disordered proteins: A simple model reveals complex behavior. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Best, R., Zheng, W., & Mittal, J. (2015). Accurate atomistic simulations of intrinsically disordered proteins. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Sizemore, S. M., Zerze, G. H., Cope, S. M., Mittal, J., & Vaiana, S. M. (2015). Comparing Solution Structures of Amylin and CGRP by Nanosecond Laser-Pump Spectroscopy and Atomistic Simulations. Biophysical Journal. 388A-389A. Miller, C. M., Brown, A. C., & Mittal, J. (2015). Membrane Cholesterol Association and Structure of Two Leukotoxin Peptides. Biophysical Journal. 552A-553A. Zerze, G. H., Best, R. B., & Mittal, J. (2015). Molecular Simulations of Unfolded and Intrinsically Disordered Proteins. Biophysical Journal. 194A-194A. Best, R., Zheng, W., & Mittal, J. (2015). Optimized Force Fields for Simulations of Intrinsically Disordered Proteins. Biophysical Journal. 227A-227A. Kim, Y., & Mittal, J. (2015). Thermodynamics and Kinetics of Multi-Protein Binding in Crowded Environments. Biophysical Journal. 114A-115A. Zerze, G. H., Miller, C., & Mittal, J. (2014). Correlation of Helical Propensity in Amylin Sequences with Known Aggregation Propensity. Biophysical Journal. 483A-483A. de Sancho, D., Mittal, J., & Best, R. (2012). Elementary time scales for protein folding: Simulation vs. experiment. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Mittal, J., & Best, R. B. (2012). Tackling secondary structure bias in all-atom explicit solvent protein force fields. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Bhattacharya, A., & Mittal, J. (2012). Transformations in the protein folding landscape by interfacial confinement. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Song, M., Snyder, M. A., & Mittal, J. (2012). Water transport through carbon nanotubes with modified water models. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Kim, Y., & Mittal, J. (2012). Quantitative Theory for Protein-Protein Interactions in a Crowded Environment. Biophysical Journal. 473A-474A. Mittal, J. (2012). Simulations of biomolecular assembly processes at interfaces. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Kim, Y., Best, R. B., & Mittal, J. (2011). Bind'NGO: Flexible Docking Model for Multiprotein Complexes with Intrinsically Disordered Segments. Biophysical Journal. 198-198. Mittal, J., & Hummer, G. (2010). Effects of molecular-scale density fluctuations and surface roughness on hydrophobic hydration. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Mittal, J., & Best, R. B. (2010). Protein Folding Landscapes for Alpha- and Beta-Miniproteins Using All-Atom Simulations with an Optimized Force-Field. Biophysical Journal. 200A-200A. Kim, Y., Best, R. B., & Mittal, J. (2010). Replica Exchange Simulations For Macromolecular Crowding Effects on Multiprotein Binding. Biophysical Journal. 57A-57A. institutional repository document Mohanty, P., Phan, T. M., & Mittal, J. (2024). Transient interdomain interactions modulate the monomeric structural ensemble and oligomerization landscape of Huntingtin Exon 1 Ozguney, B., Mohanty, P., & Mittal, J. (2024). RNA-binding tunes the conformational plasticity and intradomain stability of TDP-43 tandem RNA recognition motifs Johnson, C. N., Sojitra, K. A., Sohn, E. J., Moreno-Romero, A. K., Baudin, A., Xu, X., Mittal, J., & Libich, D. S. (2023). Insights into Molecular Diversity within the FET Family: Unraveling Phase Separation of the N-Terminal Low Complexity Domain from RNA-Binding Protein EWS Gemeinhardt, T. M., Regy, R. M., Mendiola, A. J., Ledterman, H. J., Henrickson, A., Phan, T. M., ... Francis, N. J. (2023). How a disordered linker in the Polycomb protein Polyhomeotic tunes phase separation and oligomerization Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J. (2023). Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization Kapoor, U., Kim, Y. C., & Mittal, J. (2023). A coarse-grained DNA model to study protein-DNA interactions and liquid-liquid phase separation Chao, T., Rekhi, S., Mittal, J., & Tabor, D. P. (2023). Data-Driven Models for Predicting Intrinsically Disordered Protein Polymer Physics Directly from Composition or Sequence Rekhi, S., Garcia, C. G., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K. L., & Mittal, J. (2023). Expanding the molecular language of protein liquid-liquid phase separation Rekhi, S., Devarajan, D. S., Howard, M. P., Kim, Y. C., Nikoubashman, A., & Mittal, J. (2023). Role of Strong Localized vs. Weak Distributed Interactions in Disordered Protein Phase Separation Mohanty, P., Shenoy, J., Rizuan, A., Ortiz, J., Fawzi, N. L., & Mittal, J. (2022). Aliphatic residues contribute significantly to the phase separation of TDP-43 C-terminal domain Devarajan, D. S., Rekhi, S., Nikoubashman, A., Kim, Y. C., Howard, M. P., & Mittal, J. (2022). Effect of Charge Distribution on the Dynamics of Polyampholytic Disordered Proteins Her, C., Phan, T. M., Jovic, N., Kapoor, U., Ackermann, B. E., Rizuan, A., ... Debelouchina, G. T. (2022). Molecular interactions underlying the phase separation of HP1: Role of phosphorylation, ligand and nucleic acid binding Das, B., Roychowdhury, S., Mohanty, P., Rizuan, A., Mittal, J., & Chattopadhyay, K. (2022). Zn-dependent structural transition of SOD1 modulates its ability to undergo liquid-liquid phase separation Kelley, F. M., Favetta, B., Regy, R. M., Mittal, J., & Schuster, B. S. (2021). Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants Zheng, W., Dignon, G. L., Xu, X., Regy, R. M., Fawzi, N. L., Kim, Y. C., Best, R. B., & Mittal, J. (2020). Molecular details of protein condensates probed by microsecond-long atomistic simulations Regy, R. M., Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J. (2020). Sequence dependent co-phase separation of RNA-protein mixtures elucidated using molecular simulations Perdikari, T. M., Jovic, N., Dignon, G. L., Kim, Y. C., Fawzi, N. L., & Mittal, J. (2020). A predictive coarse-grained model for position-specific effects of post-translational modifications on disordered protein phase separation Ryan, V. H., Perdikari, T. M., Naik, M. T., Saueressig, C. F., Lins, J., Dignon, G. L., ... Fawzi, N. L. (2020). Tyrosine phosphorylation regulates hnRNPA2 granule protein partitioning & reduces neurodegeneration Zheng, W., Dignon, G., Brown, M., Kim, Y. C., & Mittal, J. (2020). Hydropathy patterning complements charge patterning to describe conformational preferences of disordered proteins Schuster, B. S., Dignon, G. L., Tang, W. S., Kelley, F. M., Ranganath, A. K., Jahnke, C. N., ... Mittal, J. (2020). Identifying Sequence Perturbations to an Intrinsically Disordered Protein that Determine Its Phase Separation Behavior Mao, R., & Mittal, J. (2020). The interplay between thermodynamics and kinetics in the self-assembly of DNA functionalized nanoparticles Conicella, A. E., Dignon, G. L., Zerze, G. H., Schmidt, H. B., DOrdine, A. M., Kim, Y. C., ... Fawzi, N. L. (2019). TDP-43 -helical structure tunes liquid-liquid phase separation and function Horan, B. G., Zerze, G. H., Kim, Y. C., Vavylonis, D., & Mittal, J. (2018). Computational modeling highlights disordered Formin Homology 1 domains role in profilin-actin transfer Dignon, G. L., Zheng, W., Kim, Y. C., Best, R. B., & Mittal, J. (2017). Sequence determinants of protein phase behavior from a coarse-grained model Jena, P. V., Roxbury, D., Galassi, T. V., Akkari, L., Horoszko, C. P., Iaea, D. B., ... Heller, D. A. (2017). A carbon nanotube optical reporter maps endolysosomal lipid flux Song, M., Ding, Y., Zerze, H., Snyder, M. A., & Mittal, J. (2017). Binary superlattice design by controlling DNA-mediated interactions Zerze, G., Mittal, J., & Best, R. B. (2015). Diffusive dynamics of contact formation in disordered polypeptides Hatch, H. W., Mittal, J., & Shen, V. K. (2015). Computational Study of Trimer Self-Assembly and Fluid Phase Behavior Ding, Y., & Mittal, J. (2015). Insights into DNA-mediated interparticle interactions from a coarse-grained model Best, R. B., Miller, C., & Mittal, J. (2015). Role of solvation in pressure-induced helix stabilization Moskowitz, I., Snyder, M. A., & Mittal, J. (2015). Water transport through functionalized nanotubes with tunable hydrophobicity Kim, Y. C., & Mittal, J. (2012). Crowding induced entropy-enthalpy compensation in protein association equilibria Mittal, J., & Hummer, G. (2012). Pair diffusion, hydrodynamic interactions, and available volume in dense fluids Mittal, J., & Best, R. B. (2009). Theory and simulation of macromolecular crowding effects on protein folding stability and kinetics Krekelberg, W. P., Kumar, T., Mittal, J., Errington, J. R., & Truskett, T. M. (2009). Anomalous structure and dynamics of the Gaussian-core fluid Goel, G., Krekelberg, W. P., Pond, M. J., Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M. (2009). Available states and available space: Static properties that predict dynamics of confined fluids Mittal, J., Truskett, T. M., Errington, J. R., & Hummer, G. (2008). Layering and position-dependent diffusive dynamics of confined fluids Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M. (2008). Structural anomalies of fluids: Origins in second and higher coordination shells Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M. (2007). Cofinement, entropy, and single-particle dynamics of equilibrium hard-sphere mixtures Mittal, J., Errington, J. R., & Truskett, T. M. (2007). Does confining the hard-sphere fluid between hard walls change its average properties? Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M. (2007). How short-range attractions impact the structural order, self-diffusivity, and viscosity of a fluid Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Using Available Volume to Predict Fluid Diffusivity in Random Media Mittal, J., Errington, J. R., & Truskett, T. M. (2006). Relationship between thermodynamics and dynamics of supercooled liquids Mittal, J., Errington, J. R., & Truskett, T. M. (2005). Thermodynamics predicts how confinement modifies hard-sphere dynamics
teaching activities CHEM691 Research Instructor CHEN205 Chem Engr Thermo I Instructor CHEN354 Chem Engr Thermo Ii Instructor CHEN489 Sptp: Molecular Modeling Instructor CHEN491 Hnr - Research Instructor CHEN491 Hnr-research Instructor CHEN623 App Of Thermo To Ch E Instructor CHEN684 Professional Internship: In-ab Instructor CHEN689 Sptp: Emerg Topic In Biomolec Instructor CHEN689 Sptp: Molecular Modeling Instructor CHEN691 Research Instructor