HR job title
- Professor
- Contact Info
Mittal, Jeetain Professor
Positions
- Professor, Chemical Engineering, College of Engineering
Dr. Mittal's research focuses on biomolecular self-assembly processes with a specialization in protein phase separation and nanoparticle superlattice design.
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Overview
Publications
selected publications
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academic article
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Rizuan, A., Shenoy, J., Mohanty, P., Dos Passos, P., Mercado Ortiz, J. F., Bai, L., ... Fawzi, N. L.
(2024).
Structural details of helix-mediated TDP-43 C-terminal domain multimerization
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Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J.
(2024).
Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization. eLife.
12, rp90820.
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Rekhi, S., Garcia, C. G., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K. L., & Mittal, J.
(2024).
Expanding the molecular language of protein liquid-liquid phase separation. Nature Chemistry.
1-12.
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Johnson, C. N., Sojitra, K. A., Sohn, E. J., Moreno-Romero, A. K., Baudin, A., Xu, X., Mittal, J., & Libich, D. S.
(2024).
Insights into Molecular Diversity within the FUS/EWS/TAF15 Protein Family: Unraveling Phase Separation of the N-Terminal Low-Complexity Domain from RNA-Binding Protein EWS. Journal of the American Chemical Society.
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Sundaravadivelu Devarajan, D., Wang, J., Szaa-Mendyk, B., Rekhi, S., Nikoubashman, A., Kim, Y. C., & Mittal, J.
(2024).
Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations. Nature Communications.
15(1), 1912.
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Wake, N., Weng, S., Zheng, T., Wang, S., Kirilenko, V., Mittal, J., & Fawzi, N. L.
(2024).
Expanding the molecular grammar of polar residues and arginine in FUS prion-like domain phase separation and aggregation
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Welles, R. M., Sojitra, K. A., Garabedian, M. V., Xia, B., Wang, W., Guan, M., ... Good, M. C.
(2024).
Determinants that enable disordered protein assembly into discrete condensed phases. Nature Chemistry.
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Yan, X., Kuster, D., Mohanty, P., Nijssen, J., Pombo-Garca, K., Rizuan, A., ... Hyman, A. A.
(2024).
Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates
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Wang, J., Sundaravadivelu Devarajan, D., Kim, Y. C., Nikoubashman, A., & Mittal, J.
(2024).
Sequence-Dependent Conformational Transitions of Disordered Proteins During Condensation
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Mohanty, P., Rizuan, A., Kim, Y. C., Fawzi, N. L., & Mittal, J.
(2023).
A complex network of interdomain interactions underlies the conformational ensemble of monomeric TDP-43 and modulates its phase behavior. Protein Science.
e4891.
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Mao, R., Minevich, B., McKeen, D., Chen, Q., Lu, F., Gang, O., & Mittal, J.
(2023).
Regulating phase behavior of nanoparticle assemblies through engineering of DNA-mediated isotropic interactions. Proceedings of the National Academy of Sciences of the United States of America.
120(52), e2302037120.
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Qian, L., Mohanty, P., Jayaraman, A., Mittal, J., & Zhu, X.
(2023).
Specific residues and conformational plasticity define the substrate specificity of short-chain dehydrogenases/reductases. Journal of Biological Chemistry.
105596-105596.
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Kapoor, U., Kim, Y. C., & Mittal, J.
(2023).
Coarse-Grained Models to Study Protein-DNA Interactions and Liquid-Liquid Phase Separation. Journal of Chemical Theory and Computation.
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Wang, J., Devarajan, D. S., Nikoubashman, A., & Mittal, J.
(2023).
Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins. ACS Macro Letters.
1472-1478.
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Chao, T., Rekhi, S., Mittal, J., & Tabor, D.
(2023).
Data-driven models for predicting intrinsically disordered protein polymer physics directly from composition or sequence. Molecular Systems Design && Engineering.
8(9), 1146-1155.
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Mohanty, P., Shenoy, J., Rizuan, A., Mercado-Ortiz, J. F., Fawzi, N. L., & Mittal, J.
(2023).
A synergy between site-specific and transient interactions drives the phase separation of a disordered, low-complexity domain. Proceedings of the National Academy of Sciences of the United States of America.
120(34), e2305625120.
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Szaa-Mendyk, B., Phan, T. M., Mohanty, P., & Mittal, J.
(2023).
Challenges in studying the liquid-to-solid phase transitions of proteins using computer simulations. Current Opinion in Chemical Biology.
75, 102333-102333.
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Devarajan, D. S., Wang, J., Nikoubashman, A., Kim, Y. C., & Mittal, J.
(2023).
Sequence-Dependent Material Properties of Biomolecular Condensates. 4(05-19), 2023.05.09.540038.
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Rekhi, S., Sundaravadivelu Devarajan, D., Howard, M. P., Kim, Y. C., Nikoubashman, A., & Mittal, J.
(2023).
Role of Strong Localized vs Weak Distributed Interactions in Disordered Protein Phase Separation. Journal of Physical Chemistry B.
127(17), 3829-3838.
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Welles, R. M., Sojitra, K. A., Garabedian, M. V., Xia, B., Regy, R. M., Gallagher, E. R., Mittal, J., & Good, M. C.
(2023).
Determinants of Disordered Protein Co-Assembly Into Discrete Condensed Phases. 4(03-21), 2023.03.10.532134.
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Kim, Y., & Mittal, J.
(2023).
Coarse-grained model for simulating protein complexes: Folded vs. disordered proteins. 122(3), 65a-65a.
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Roychowdhury, S., Das, B., Mohanty, P., Rizuan, A., Mittal, J., & Chattopadhyay, K.
(2023).
Cofactor-dependent structural transition of SOD1 modulates its ability to undergo liquid-liquid phase separation. 122(3), 353a-353a.
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Devarajan, D. S., Kim, Y., & Mittal, J.
(2023).
Dynamics and rheology of polyampholyte condensates. 122(3), 313a-313a.
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Rekhi, S., Garcia, C., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K., & Mittal, J.
(2023).
Elucidating residue level contributions to phase separation using a model polypeptide. 122(3), 206a-206a.
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Mohanty, P., Shenoy, J., Rizuan, A., Jovic, N., Mercado-Ortiz, J., Fawzi, N. L., & Mittal, J.
(2023).
Hydrophobic residues in disordered and helical regions mediate the oligomerization and phase separation of TDP-43 C-terminal domain. 122(3), 208a-208a.
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Kapoor, U., Kim, Y., & Mittal, J.
(2023).
Molecular features underlying phase separation of protein-nucleic acid condensates revealed by a new coarse-grained DNA model. 122(3), 171a-171a.
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Phan, T. M., Kapoor, U., Debelouchina, G. T., & Mittal, J.
(2023).
Molecular insights into phase separation of HP1 isoforms using coarse-grained and atomistic simulations. 122(3), 208a-208a.
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Rizuan, A., Mohanty, P., Fawzi, N. L., & Mittal, J.
(2023).
Multiscale simulations of TDP-43 full-length uncover molecular determinants of its phase separation beyond N/C-terminal oligomerization. 122(3), 209a-209a.
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Sojitra, K. A., Johnson, C., Sohn, E., Libich, D., & Mittal, J.
(2023).
Unraveling the phase separation of EWS low complexity domain using molecular dynamics simulations. 122(3), 346a-346a.
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Das, B., Roychowdhury, S., Mohanty, P., Rizuan, A., Chakraborty, J., Mittal, J., & Chattopadhyay, K.
(2023).
A Zn-dependent structural transition of SOD1 modulates its ability to undergo phase separation. 42(2), e111185.
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Mittal, J.
(2023).
Abstract 2520: Using computer simulations to uncover the molecular grammar of biomolecular phase separation. Journal of Biological Chemistry.
299(3), s520-103969.
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Her, C., Phan, T. M., Jovic, N., Kapoor, U., Ackermann, B. E., Rizuan, A., ... Debelouchina, G. T.
(2022).
Molecular interactions underlying the phase separation of HP1: role of phosphorylation, ligandand nucleic acid binding. 50(22), 12702-12722.
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Mohanty, P., Kapoor, U., Sundaravadivelu Devarajan, D., Phan, T. M., Rizuan, A., & Mittal, J.
(2022).
Principles Governing the Phase Separation of Multidomain Proteins. Biochemistry.
61(22), 2443-2455.
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Devarajan, D. S., Rekhi, S., Nikoubashman, A., Kim, Y. C., Howard, M. P., & Mittal, J.
(2022).
Effect of Charge Distribution on the Dynamics of Polyampholytic Disordered Proteins. MACROMOLECULES.
55(20), 8987-8997.
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Rizuan, A., Jovic, N., Phan, T. M., Kim, Y. C., & Mittal, J.
(2022).
Developing Bonded Potentials for a Coarse-Grained Model of Intrinsically Disordered Proteins. Journal of Chemical Information and Modeling.
62(18), 4474-4485.
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Mao, R., O'Leary, J., Mesbah, A., & Mittal, J.
(2022).
A Deep Learning Framework Discovers Compositional Order and Self-Assembly Pathways in Binary Colloidal Mixtures. JACS Au.
2(8), 1818-1828.
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Liu, A. P., Appel, E. A., Ashby, P. D., Baker, B. M., Franco, E., Gu, L., ... Chaudhuri, O.
(2022).
The living interface between synthetic biology and biomaterial design. Nature Materials.
21(4), 390-397.
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Ingolfsson, H. I., Rizuan, A., Mohanty, P., Mittal, J., & Berry, J.
(2022).
Multiscale simulations reveal molecular dynamics of TDP-43 assemblies. Biophysical Journal.
121(3), 55-55.
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Chatterjee, S., Kan, Y., Brzezinski, M., Koynov, K., Regy, R. M., Murthy, A. C., ... Parekh, S. H.
(2022).
Reversible Kinetic Trapping of FUS Biomolecular Condensates. Advanced Science.
9(4), e2104247-2104247.
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Kelley, F. M., Favetta, B., Regy, R. M., Mittal, J., & Schuster, B. S.
(2021).
Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants. Proceedings of the National Academy of Sciences of the United States of America.
118(51), e2109967118.
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Murthy, A. C., Tang, W. S., Jovic, N., Janke, A. M., Seo, D. H., Perdikari, T. M., Mittal, J., & Fawzi, N. L.
(2021).
Molecular interactions contributing to FUS SYGQ LC-RGG phase separation and co-partitioning with RNA polymerase II heptads. Nature Structural and Molecular Biology.
28(11), 923-935.
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Fawzi, N. L., Parekh, S. H., & Mittal, J.
(2021).
Biophysical studies of phase separation integrating experimental and computational methods. Current Opinion in Structural Biology.
70, 78-86.
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Garcia Garcia, C., Patkar, S. S., Jovic, N., Mittal, J., & Kiick, K. L.
(2021).
Alteration of Microstructure in Biopolymeric Hydrogels via Compositional Modification of Resilin-Like Polypeptides. ACS Biomaterial Science and Engineering.
7(9), 4244-4257.
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Regy, R. M., Thompson, J., Kim, Y. C., & Mittal, J.
(2021).
Improved coarse-grained model for studying sequence dependent phase separation of disordered proteins. Protein Science.
30(7), 1371-1379.
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Bock, A. S., Murthy, A. C., Tang, W. S., Jovic, N., Shewmaker, F., Mittal, J., & Fawzi, N. L.
(2021).
N-terminal acetylation modestly enhances phase separation and reduces aggregation of the low-complexity domain of RNA-binding protein fused in sarcoma. Protein Science.
30(7), 1337-1349.
-
Mao, R., Pretti, E., & Mittal, J.
(2021).
Temperature-Controlled Reconfigurable Nanoparticle Binary Superlattices. ACS Nano.
15(5), 8466-8473.
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Perdikari, T. M., Jovic, N., Dignon, G. L., Kim, Y. C., Fawzi, N. L., & Mittal, J.
(2021).
A predictive coarse-grained model for position-specific effects of post-translational modifications. Biophysical Journal.
120(7), 1187-1197.
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Schuster, B. S., Regy, R. M., Dolan, E. M., Kanchi Ranganath, A., Jovic, N., Khare, S. D., Shi, Z., & Mittal, J.
(2021).
Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties. Journal of Physical Chemistry B.
125(14), 3441-3451.
-
Shea, J., Best, R. B., & Mittal, J.
(2021).
Physics-based computational and theoretical approaches to intrinsically disordered proteins. Current Opinion in Structural Biology.
67, 219-225.
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Zheng, W., Dignon, G., Kim, Y., Best, R. B., & Mittal, J.
(2021).
Computational Models for Liquid-Liquid Phase Separation of Intrinsically Disordered Proteins. Biophysical Journal.
120(3), 5A-5A.
-
Ryan, V. H., Perdikari, T. M., Naik, M. T., Saueressig, C. F., Lins, J., Dignon, G. L., ... Fawzi, N. L.
(2021).
Tyrosine phosphorylation regulates hnRNPA2 granule protein partitioning and reduces neurodegeneration. EMBO Journal.
40(3), e105001.
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O'Leary, J., Mao, R., Pretti, E. J., Paulson, J. A., Mittal, J., & Mesbah, A.
(2021).
Deep learning for characterizing the self-assembly of three-dimensional colloidal systems. SOFT MATTER.
17(4), 989-999.
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Zheng, W., Dignon, G. L., Jovic, N., Xu, X., Regy, R. M., Fawzi, N. L., ... Mittal, J.
(2020).
Molecular Details of Protein Condensates Probed by Microsecond Long Atomistic Simulations. Journal of Physical Chemistry B.
124(51), 11671-11679.
-
Mao, R., & Mittal, J.
(2020).
Self-Assembly of DNA-Functionalized Nanoparticles Guided by Binding Kinetics. Journal of Physical Chemistry B.
124(51), 11593-11599.
-
Regy, R. M., Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J.
(2020).
Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations. Nucleic Acids Research (NAR).
48(22), 12593-12603.
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Tang, W. S., Fawzi, N. L., & Mittal, J.
(2020).
Refining All-Atom Protein Force Fields for Polar-Rich, Prion-like, Low-Complexity Intrinsically Disordered Proteins. Journal of Physical Chemistry B.
124(43), 9505-9512.
-
Mammen Regy, R., & Mittal, J.
(2020).
Living cells as test tubes. Nature Chemical Biology.
16(9), 934-935.
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Rzepa, C., Siderius, D. W., Hatch, H. W., Shen, V. K., Rangarajan, S., & Mittal, J.
(2020).
Computational Investigation of Correlations in Adsorbate Entropy for Pure-Silica Zeolite Adsorbents. 124(30), 16350-16361.
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Zheng, W., Dignon, G., Brown, M., Kim, Y. C., & Mittal, J.
(2020).
Hydropathy Patterning Complements Charge Patterning to Describe Conformational Preferences of Disordered Proteins. Journal of Physical Chemistry Letters.
11(9), 3408-3415.
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Schuster, B. S., Dignon, G. L., Tang, W. S., Kelley, F. M., Ranganath, A. K., Jahnke, C. N., ... Mittal, J.
(2020).
Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior. Proceedings of the National Academy of Sciences of the United States of America.
117(21), 11421-11431.
-
Mahynski, N. A., Mao, R., Pretti, E., Shen, V. K., & Mittal, J.
(2020).
Grand canonical inverse design of multicomponent colloidal crystals. SOFT MATTER.
16(13), 3187-3194.
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Pretti, E., Shen, V. K., Mittal, J., & Mahynski, N. A.
(2020).
Symmetry-Based Crystal Structure Enumeration in Two Dimensions. Journal of Physical Chemistry A.
124(16), 3276-3285.
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Rani, L., Mittal, J., & Mallajosyula, S. S.
(2020).
Effect of Phosphorylation and O-GlcNAcylation on Proline-Rich Domains of Tau. Journal of Physical Chemistry B.
124(10), 1909-1918.
-
Conicella, A. E., Dignon, G. L., Zerze, G. H., Schmidt, H. B., D'Ordine, A. M., Kim, Y. C., ... Fawzi, N. L.
(2020).
TDP-43 -helical structure tunes liquid-liquid phase separation and function. Proceedings of the National Academy of Sciences of the United States of America.
117(11), 5883-5894.
-
Conicella, A. E., Dignon, G., Zerze, G. H., Schmidt, B., D'Ordine, A. M., Kim, Y., ... Fawzi, N. L.
(2020).
Alpha-Helical Structure in TDP-43 Tunes Liquid-liquid Phase Separation and Cellular Function. Biophysical Journal.
118(3), 5A-6A.
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Zheng, W., Dignon, G., Brown, M., & Mittal, J.
(2020).
Impact of Hydrophobic Patterning on Conformational Ensemble of Disordered Proteins. Biophysical Journal.
118(3), 214A-214A.
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Kunkel, J., Kodis, G., Sutto-Ortiz, P., Bignon, C., Jovic, N., Mittal, J., Longhi, S., & Vaiana, S. M.
(2020).
Internal Dynamics of the Measles Virus N-TAIL Protein by Photo-Induced Electron Transfer Experiments and Molecular Simulations. Biophysical Journal.
118(3), 541A-541A.
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Kim, Y., Jovic, N., & Mittal, J.
(2020).
Secondary Structure Prediction for Intrinsically Disordered Proteins. Biophysical Journal.
118(3), 213A-213A.
-
Regy, R. M., Dignon, G. L., Kim, Y., & Mittal, J.
(2020).
Studying RNA Modulated Protein Liquid-Liquid Phase Separation using Coarse-Grained Models. Biophysical Journal.
118(3), 537A-537A.
-
Pretti, E., Zerze, H., Song, M., Ding, Y., Mao, R., & Mittal, J.
(2019).
Size-dependent thermodynamic structural selection in colloidal crystallization. Science Advances.
5(9), eaaw5912.
-
Pretti, E., & Mittal, J.
(2019).
Extension of the Einstein molecule method for solid free energy calculation to non-periodic and semi-periodic systems. Journal of Chemical Physics.
151(5), 054105-054105.
-
Sanyal, T., Mittal, J., & Shell, M. S.
(2019).
A hybrid, bottom-up, structurally accurate, Go-like coarse-grained protein model. Journal of Chemical Physics.
151(4), 044111-044111.
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Murthy, A. C., Dignon, G. L., Kan, Y., Zerze, G. H., Parekh, S. H., Mittal, J., & Fawzi, N. L.
(2019).
Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain. Nature Structural and Molecular Biology.
26(7), 637-648.
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Heller, D. A., Baker, H., Budhathoki-Uprety, J., Cupo, C., Harvey, J., Jena, P. V., ... Zheng, M.
(2019).
(Invited) Carbon Nanotube Photoluminescence Solvatochromism in Biomedicine: Spectroscopy, Imaging, and Modulation. ECS Meeting Abstracts.
MA2019-01(9), 721-721.
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Zerze, G. H., Zheng, W., Best, R. B., & Mittal, J.
(2019).
Evolution of All-Atom Protein Force Fields to Improve Local and Global Properties. Journal of Physical Chemistry Letters.
10(9), 2227-2234.
-
Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J.
(2019).
Temperature-Controlled Liquid-Liquid Phase Separation of Disordered Proteins. ACS Central Science.
5(5), 821-830.
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Mahynski, N. A., Pretti, E., Shen, V. K., & Mittal, J.
(2019).
Using symmetry to elucidate the importance of stoichiometry in colloidal crystal assembly. Nature Communications.
10(1), 2028.
-
Dignon, G. L., Zheng, W., & Mittal, J.
(2019).
Simulation methods for liquid-liquid phase separation of disordered proteins. Current Opinion in Chemical Engineering.
23, 92-98.
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Maula, T. A., Hatch, H. W., Shen, V. K., Rangarajan, S., & Mittal, J.
(2019).
Designing Molecular Building Blocks for the Self-assembly of Complex Porous Networks. Molecular Systems Design && Engineering.
4(3), 644-653.
-
Galassi, T. V., Jena, P. V., Shah, J., Ao, G., Molitor, E., Bram, Y., ... Heller, D. A.
(2018).
An optical nanoreporter of endolysosomal lipid accumulation reveals enduring effects of diet on hepatic macrophages in vivo. Science Translational Medicine.
10(461), eaar2680.
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Dignon, G. L., Zheng, W., Best, R. B., Kim, Y. C., & Mittal, J.
(2018).
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins. Proceedings of the National Academy of Sciences of the United States of America.
115(40), 9929-9934.
-
Pretti, E., Zerze, H., Song, M., Ding, Y., Mahynski, N. A., Hatch, H. W., Shen, V. K., & Mittal, J.
(2018).
Assembly of three-dimensional binary superlattices from multi-flavored particles. SOFT MATTER.
14(30), 6303-6312.
-
Horan, B. G., Zerze, G. H., Kim, Y. C., Vavylonis, D., & Mittal, J.
(2018).
Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer. FEBS Letters.
592(11), 1804-1816.
-
Harvey, J. D., Zerze, G. H., Tully, K. M., Mittal, J., & Heller, D. A.
(2018).
Electrostatic Screening Modulates Analyte Binding and Emission of Carbon Nanotubes. Journal of Physical Chemistry C.
122(19), 10592-10599.
-
Das, P., Matysiak, S., & Mittal, J.
(2018).
Looking at the Disordered Proteins through the Computational Microscope. ACS Central Science.
4(5), 534-542.
-
Janke, A. M., Seo, D. H., Rahmanian, V., Conicella, A. E., Mathews, K. L., Burke, K. A., Mittal, J., & Fawzi, N. L.
(2018).
Lysines in the RNA Polymerase II C-Terminal Domain Contribute to TAF15 Fibril Recruitment. Biochemistry.
57(17), 2549-2563.
-
Zheng, W., Zerze, G. H., Borgia, A., Mittal, J., Schuler, B., & Best, R. B.
(2018).
Inferring properties of disordered chains from FRET transfer efficiencies. Journal of Chemical Physics.
148(12), 123329-123329.
-
Ryan, V. H., Dignon, G. L., Zerze, G. H., Chabata, C. V., Silva, R., Conicella, A. E., ... Fawzi, N. L.
(2018).
Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation. Molecular Cell.
69(3), 465-479.e7.
-
Song, M., Ding, Y., Zerze, H., Snyder, M. A., & Mittal, J.
(2018).
Binary Superlattice Design by Controlling DNA-Mediated Interactions. Langmuir.
34(3), 991-998.
-
Dignon, G. L., Zheng, W., Kim, Y. C., Best, R. B., & Mittal, J.
(2018).
Sequence determinants of protein phase behavior from a coarse-grained model. PLoS Computational Biology.
14(1), e1005941-e1005941.
-
Jena, P. V., Roxbury, D., Galassi, T. V., Akkari, L., Horoszko, C. P., Iaea, D. B., ... Heller, D. A.
(2017).
A Carbon Nanotube Optical Reporter Maps Endolysosomal Lipid Flux. ACS Nano.
11(11), 10689-10703.
-
Monahan, Z., Ryan, V. H., Janke, A. M., Burke, K. A., Rhoads, S. N., Zerze, G. H., ... Fawzi, N. L.
(2017).
Phosphorylation of the FUS low-complexity domain disrupts phase separation, aggregation, and toxicity. EMBO Journal.
36(20), 2951-2967.
-
Dignon, G. L., Zerze, G. H., & Mittal, J.
(2017).
Interplay Between Membrane Composition and Structural Stability of Membrane-Bound hIAPP. Journal of Physical Chemistry B.
121(37), 8661-8668.
-
Mahynski, N. A., Zerze, H., Hatch, H. W., Shen, V. K., & Mittal, J.
(2017).
Assembly of multi-flavored two-dimensional colloidal crystals. SOFT MATTER.
13(32), 5397-5408.
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Jena, P. V., Mittal, J., Heller, D. A., Safaee, M., & Roxbury, D.
(2017).
Experimental and Computational Approaches to Explore the the Mechanisms of Carbon Nanotube Biosensing. ECS Meeting Abstracts.
MA2017-01(8), 642-642.
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Modi, T., Zerze, G. H., Mittal, J., Vaiana, S. M., & Ozkan, S. B.
(2017).
Intrinsically Disordered Protein Dynamics Uncovered through Dynamic Flexibility Index (DFI) Analysis. Biophysical Journal.
112(3), 208a-209a.
-
Harvey, J. D., Jena, P. V., Baker, H. A., Zerze, G. H., Williams, R. M., Galassi, T. V., ... Heller, D. A.
(2017).
A Carbon Nanotube Reporter of miRNA Hybridization Events In Vivo. 1(4), 0041.
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Song, M., Ding, Y., Snyder, M. A., & Mittal, J.
(2016).
Effect of Nonionic Surfactant on Association/Dissociation Transition of DNA-Functionalized Colloids. Langmuir.
32(39), 10017-10025.
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Conicella, A. E., Zerze, G. H., Mittal, J., & Fawzi, N. L.
(2016).
ALS Mutations Disrupt Phase Separation Mediated by alpha-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. Structure.
24(9), 1537-1549.
-
Miller, C. M., Kim, Y. C., & Mittal, J.
(2016).
Protein Composition Determines the Effect of Crowding on the Properties of Disordered Proteins. Biophysical Journal.
111(1), 28-37.
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Hatch, H. W., Yang, S., Mittal, J., & Shen, V. K.
(2016).
Self-assembly of trimer colloids: effect of shape and interaction range. SOFT MATTER.
12(18), 4170-4179.
-
Levine, Z. A., Rapp, M. V., Wei, W., Mullen, R. G., Wu, C., Zerze, G. H., ... Shea, J.
(2016).
Surface force measurements and simulations of mussel-derived peptide adhesives on wet organic surfaces. Proceedings of the National Academy of Sciences of the United States of America.
113(16), 4332-4337.
-
Zerze, G. H., Mittal, J., & Best, R. B.
(2016).
Diffusive Dynamics of Contact Formation in Disordered Polypeptides. 116(6), 068102.
-
Zerze, G. H., & Mittal, J.
(2015).
Effect of O-Linked Glycosylation on the Equilibrium Structural Ensemble of Intrinsically Disordered Polypeptides. Journal of Physical Chemistry B.
119(51), 15583-15592.
-
Zerze, G. H., Best, R. B., & Mittal, J.
(2015).
Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations. Journal of Physical Chemistry B.
119(46), 14622-14630.
-
Zerze, G. H., Mullen, R. G., Levine, Z. A., Shea, J., & Mittal, J.
(2015).
To What Extent Does Surface Hydrophobicity Dictate Peptide Folding and Stability near Surfaces?. Langmuir.
31(44), 12223-12230.
-
Ding, Y., & Mittal, J.
(2015).
Equilibrium and nonequilibrium dynamics of soft sphere fluids. SOFT MATTER.
11(26), 5274-5281.
-
Zerze, G. H., Uz, B., & Mittal, J.
(2015).
Folding thermodynamics of -hairpins studied by replica-exchange molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics.
83(7), 1307-1315.
-
Zerze, G. H., Miller, C. M., Granata, D., & Mittal, J.
(2015).
Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics. Journal of Chemical Theory and Computation.
11(6), 2776-2782.
-
Hatch, H. W., Mittal, J., & Shen, V. K.
(2015).
Computational study of trimer self-assembly and fluid phase behavior. Journal of Chemical Physics.
142(16), 164901-164901.
-
Best, R. B., Zheng, W., & Mittal, J.
(2015).
Correction to Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association. Journal of Chemical Theory and Computation.
11(4), 1978-1978.
-
Best, R. B., Miller, C., & Mittal, J.
(2014).
Role of solvation in pressure-induced helix stabilization. Journal of Chemical Physics.
141(22), 22D522-22D522.
-
Best, R. B., Zheng, W., & Mittal, J.
(2014).
Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association. Journal of Chemical Theory and Computation.
10(11), 5113-5124.
-
Miller, C. M., Brown, A. C., & Mittal, J.
(2014).
Disorder in cholesterol-binding functionality of CRAC peptides: a molecular dynamics study. Journal of Physical Chemistry B.
118(46), 13169-13174.
-
Ding, Y., & Mittal, J.
(2014).
Insights into DNA-mediated interparticle interactions from a coarse-grained model. Journal of Chemical Physics.
141(18), 184901-184901.
-
Kim, Y. C., Bhattacharya, A., & Mittal, J.
(2014).
Macromolecular crowding effects on coupled folding and binding. Journal of Physical Chemistry B.
118(44), 12621-12629.
-
Moskowitz, I., Snyder, M. A., & Mittal, J.
(2014).
Water transport through functionalized nanotubes with tunable hydrophobicity. Journal of Chemical Physics.
141(18), 18C532-18C532.
-
Song, M., Snyder, M. A., & Mittal, J.
(2014).
Effect of molecular structure on fluid transport through carbon nanotubes. 112(20), 2658-2664.
-
Zerze, G. H., Best, R. B., & Mittal, J.
(2014).
Modest influence of FRET chromophores on the properties of unfolded proteins. Biophysical Journal.
107(7), 1654-1660.
-
Iliafar, S., Mittal, J., Vezenov, D., & Jagota, A.
(2014).
Interaction of single-stranded DNA with curved carbon nanotube is much stronger than with flat graphite. Journal of the American Chemical Society.
136(37), 12947-12957.
-
Miller, C., Zerze, G. H., & Mittal, J.
(2014).
Correction to Molecular Simulations Indicate Marked Differences in the Structure of Amylin Mutants, Correlated with Known Aggregation Propensity. Journal of Physical Chemistry B.
118(29), 8914-8915.
-
Wuttke, R., Hofmann, H., Nettels, D., Borgia, M. B., Mittal, J., Best, R. B., & Schuler, B.
(2014).
Temperature-dependent solvation modulates the dimensions of disordered proteins. Proceedings of the National Academy of Sciences of the United States of America.
111(14), 5213-5218.
-
Shankar, A., Mittal, J., & Jagota, A.
(2014).
Binding between DNA and carbon nanotubes strongly depends upon sequence and chirality. Langmuir.
30(11), 3176-3183.
-
Miller, C., Zerze, G. H., & Mittal, J.
(2013).
Molecular simulations indicate marked differences in the structure of amylin mutants, correlated with known aggregation propensity. Journal of Physical Chemistry B.
117(50), 16066-16075.
-
Roxbury, D., Zhang, S., Mittal, J., Degrado, W. F., & Jagota, A.
(2013).
Structural Stability and Binding Strength of a Designed Peptide-Carbon Nanotube Hybrid. Journal of Physical Chemistry C.
117(49), 26255-26261.
-
Zerze, H., Mittal, J., & McHugh, A. J.
(2013).
Ab Initio Crystallization of Alkanes: Structure and Kinetics of Nuclei Formation. MACROMOLECULES.
46(22), 9151-9157.
-
Qin, S., Mittal, J., & Zhou, H.
(2013).
Folding free energy surfaces of three small proteins under crowding: validation of the postprocessing method by direct simulation. Physical Biology.
10(4), 045001-045001.
-
Bhattacharya, A., Kim, Y. C., & Mittal, J.
(2013).
Protein-protein interactions in a crowded environment. Biophysical Reviews.
5(2), 99-108.
-
Kim, Y. C., & Mittal, J.
(2013).
Crowding induced entropy-enthalpy compensation in protein association equilibria. 110(20), 208102.
-
De Sancho, D., Mittal, J., & Best, R. B.
(2013).
Folding Kinetics and Unfolded State Dynamics of the GB1 Hairpin from Molecular Simulation. Journal of Chemical Theory and Computation.
9(3), 1743-1753.
-
Roxbury, D., Jagota, A., & Mittal, J.
(2013).
Structural characteristics of oligomeric DNA strands adsorbed onto single-walled carbon nanotubes. Journal of Physical Chemistry B.
117(1), 132-140.
-
Mittal, J., Yoo, T. H., Georgiou, G., & Truskett, T. M.
(2013).
Structural ensemble of an intrinsically disordered polypeptide. Journal of Physical Chemistry B.
117(1), 118-124.
-
Shankar, A., Jagota, A., & Mittal, J.
(2012).
DNA base dimers are stabilized by hydrogen-bonding interactions including non-Watson-Crick pairing near graphite surfaces. Journal of Physical Chemistry B.
116(40), 12088-12094.
-
Best, R. B., Mittal, J., Feig, M., & MacKerell, A. D.
(2012).
Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of -helix and -hairpin formation. Biophysical Journal.
103(5), 1045-1051.
-
Best, R. B., Zhu, X., Shim, J., Lopes, P., Mittal, J., Feig, M., & Mackerell, A. D.
(2012).
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone , and side-chain (1) and (2) dihedral angles. Journal of Chemical Theory and Computation.
8(9), 3257-3273.
-
Bhattacharya, A., Best, R. B., & Mittal, J.
(2012).
Smoothing of the GB1 hairpin folding landscape by interfacial confinement. Biophysical Journal.
103(3), 596-600.
-
Mittal, J., & Hummer, G.
(2012).
Pair diffusion, hydrodynamic interactions, and available volume in dense fluids. Journal of Chemical Physics.
137(3), 034110-034110.
-
Roxbury, D., Mittal, J., & Jagota, A.
(2012).
Molecular-basis of single-walled carbon nanotube recognition by single-stranded DNA. Nano Letters.
12(3), 1464-1469.
-
Best, R. B., de Sancho, D., & Mittal, J.
(2012).
Residue-specific -helix propensities from molecular simulation. Biophysical Journal.
102(6), 1462-1467.
-
Melillo, M., Zhu, F., Snyder, M. A., & Mittal, J.
(2011).
Water Transport through Nanotubes with Varying Interaction Strength between Tube Wall and Water. Journal of Physical Chemistry Letters.
2(23), 2978-2983.
-
Roxbury, D., Jagota, A., & Mittal, J.
(2011).
Sequence-specific self-stitching motif of short single-stranded DNA on a single-walled carbon nanotube. Journal of the American Chemical Society.
133(34), 13545-13550.
-
Best, R. B., & Mittal, J.
(2011).
Microscopic events in -hairpin folding from alternative unfolded ensembles. Proceedings of the National Academy of Sciences of the United States of America.
108(27), 11087-11092.
-
Best, R. B., & Mittal, J.
(2011).
Free-energy landscape of the GB1 hairpin in all-atom explicit solvent simulations with different force fields: Similarities and differences. Proteins: Structure, Function, and Bioinformatics.
79(4), 1318-1328.
-
Rosen, J., Kim, Y. C., & Mittal, J.
(2011).
Modest protein-crowder attractive interactions can counteract enhancement of protein association by intermolecular excluded volume interactions. Journal of Physical Chemistry B.
115(11), 2683-2689.
-
Rosen, J., Kim, Y. C., & Mittal, J.
(2011).
Macromolecular Crowding Effects on Multiprotein Binding Equilibria: Molecular Simulation and Theory. Biophysical Journal.
100(3), 614a-614a.
-
Kim, Y. C., Best, R. B., & Mittal, J.
(2010).
Macromolecular crowding effects on protein-protein binding affinity and specificity. Journal of Chemical Physics.
133(20), 205101-205101.
-
Best, R. B., & Mittal, J.
(2010).
Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse. Journal of Physical Chemistry B.
114(46), 14916-14923.
-
Mittal, J., & Best, R. B.
(2010).
Tackling force-field bias in protein folding simulations: folding of Villin HP35 and Pin WW domains in explicit water. Biophysical Journal.
99(3), L26-L28.
-
Best, R. B., & Mittal, J.
(2010).
Balance between alpha and beta structures in ab initio protein folding. Journal of Physical Chemistry B.
114(26), 8790-8798.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2010).
Erratum: Relationship between thermodynamics and dynamics of supercooled liquids [J. Chem. Phys. 125, 076102 (2006)]. Journal of Chemical Physics.
132(16), 169904-169904.
-
Mittal, J., & Best, R. B.
(2010).
Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders. Biophysical Journal.
98(2), 315-320.
-
Mittal, J., & Hummer, G.
(2010).
Interfacial thermodynamics of confined water near molecularly rough surfaces. Faraday Discussions.
146(0), 341-352.
-
Mittal, J.
(2009).
Using compressibility factor as a predictor of confined hard-sphere fluid dynamics. Journal of Physical Chemistry B.
113(42), 13800-13804.
-
Goel, G., Krekelberg, W. P., Pond, M. J., Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M.
(2009).
Available states and available space: static properties that predict self-diffusivity of confined fluids. Journal of Statistical Mechanics: Theory and Experiment.
2009(04), p04006-P04006.
-
Krekelberg, W. P., Kumar, T., Mittal, J., Errington, J. R., & Truskett, T. M.
(2009).
Anomalous structure and dynamics of the Gaussian-core fluid. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics.
79(3 Pt 1), 031203.
-
Mittal, J., & Hummer, G.
(2008).
Static and dynamic correlations in water at hydrophobic interfaces. Proceedings of the National Academy of Sciences of the United States of America.
105(51), 20130-20135.
-
Mittal, J., & Best, R. B.
(2008).
Thermodynamics and kinetics of protein folding under confinement. Proceedings of the National Academy of Sciences of the United States of America.
105(51), 20233-20238.
-
Mittal, J., Truskett, T. M., Errington, J. R., & Hummer, G.
(2008).
Layering and position-dependent diffusive dynamics of confined fluids. Physical Review Letters.
100(14), 145901.
-
Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M.
(2008).
Structural anomalies of fluids: origins in second and higher coordination shells. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics.
77(4 Pt 1), 041201.
-
Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M.
(2007).
Confinement, entropy, and single-particle dynamics of equilibrium hard-sphere mixtures. Journal of Chemical Physics.
127(15), 154513-154513.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2007).
Relationships between self-diffusivity, packing fraction, and excess entropy in simple bulk and confined fluids. Journal of Physical Chemistry B.
111(34), 10054-10063.
-
Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M.
(2007).
How short-range attractions impact the structural order, self-diffusivity, and viscosity of a fluid. Journal of Chemical Physics.
127(4), 044502-044502.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2007).
Does confining the hard-sphere fluid between hard walls change its average properties?. Journal of Chemical Physics.
126(24), 244708-244708.
-
Errington, J. R., Truskett, T. M., & Mittal, J.
(2007).
Erratum: Excess-entropy-based anomalies for a waterlike fluid [J. Chem. Phys. 125, 244502 (2006)]. Journal of Chemical Physics.
126(18), 189901-189901.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2007).
Quantitative Link between Single-Particle Dynamics and Static Structure of Supercooled Liquids. 111(19), 5531-5531.
-
Errington, J. R., Truskett, T. M., & Mittal, J.
(2006).
Excess-entropy-based anomalies for a waterlike fluid. Journal of Chemical Physics.
125(24), 244502-244502.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Using available volume to predict fluid diffusivity in random media. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics.
74(4 Pt 1), 040102.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Quantitative link between single-particle dynamics and static structure of supercooled liquids. Journal of Physical Chemistry B.
110(37), 18147-18150.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Relationship between thermodynamics and dynamics of supercooled liquids. Journal of Chemical Physics.
125(7), 076102-076102.
-
Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Thermodynamics predicts how confinement modifies the dynamics of the equilibrium hard-sphere fluid. 96(17), 177804.
-
Mittal, J., Shah, P., & Truskett, T. M.
(2004).
Using Energy Landscapes To Predict the Properties of Thin Films. 108(51), 19769-19779.
-
Sharma, A., & Mittal, J.
(2003).
Erratum: Instability of Thin Liquid Films by Density Variations: A New Mechanism that Mimics Spinodal Dewetting [Phys. Rev. Lett.PRLTAO0031-9007 89, 186101 (2002)]. Physical Review Letters.
90(25), 259901.
-
Sharma, A., Mittal, J., & Verma, R.
(2002).
Instability and Dewetting of Thin Films Induced by Density Variations. 18(26), 10213-10220.
-
Sharma, A., & Mittal, J.
(2002).
Instability of thin liquid films by density variations: a new mechanism that mimics spinodal dewetting. 89(18), 186101.
-
Dewing, S. M., Phan, T. M., Kraft, E. J., Mittal, J., & Showalter, S. A.
Acetylation-Dependent Compaction of the Histone H4 Tail Ensemble. Journal of Physical Chemistry B.
-
Rekhi, S., & Mittal, J.
Amino Acid Transfer Free Energies Reveal Thermodynamic Driving Forces in Biomolecular Condensate Formation. 5(12-13), 2024.12.01.625774.
-
Rzepa, C., Dabagian, D., Siderius, D. W., Hatch, H. W., Shen, V. K., Mittal, J., & Rangarajan, S.
Elucidating Thermodynamically Driven StructureProperty Relations for Zeolite Adsorption Using Neural Networks. JACS Au.
-
Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J.
Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization. eLife.
12.
-
Ozguney, B., Mohanty, P., & Mittal, J.
RNA binding tunes the conformational plasticity and intradomain stability of TDP-43 tandem RNA recognition motifs. Biophysical Journal.
S0006-3495(24)00658-1.
-
Devarajan, D. S., & Mittal, J.
Sequence-Encoded Spatiotemporal Dependence of Viscoelasticity of Protein Condensates Using Computational Microrheology. JACS Au.
4(11), 4394-4405.
-
Wang, J., Sundaravadivelu Devarajan, D., Muthukumar, K., Kim, Y. C., Nikoubashman, A., & Mittal, J.
Sequence-dependent conformational transitions of disordered proteins during condensation. Chemical Science.
-
Devarajan, D. S., & Mittal, J.
Sequence-encoded Spatiotemporal Dependence of Viscoelasticity of Protein Condensates Using Computational Microrheology. 2024.08.13.607792.
-
Rizuan, A., Shenoy, J., Mohanty, P., Dos Passos, P., Mercado Ortiz, J. F., Bai, L., ... Fawzi, N. L.
(2024).
Structural details of helix-mediated TDP-43 C-terminal domain multimerization
-
chapter
-
Mammen Regy, R., Zheng, W., & Mittal, J.
(2021).
Using a sequence-specific coarse-grained model for studying protein liquid-liquid phase separation. METHODS IN ENZYMOLOGY.
LIQUID-LIQUID PHASE COEXISTENCE AND MEMBRANELESS ORGANELLES.
(pp. 1-17).
Elsevier.
-
Dignon, G. L., Best, R. B., & Mittal, J.
(2020).
Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties. Annual Review of Physical Chemistry.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 71.
(pp. 53-75).
Annual Reviews.
-
Mittal, J., Krekelberg, W. P., Errington, J. R., & Truskett, T. M.
(2007).
Computing Free Volume, Structural Order, and Entropy of Liquids and Glasses. Reviews in Computational Chemistry.
Reviews in Computational Chemistry.
(pp. 125-158).
Wiley.
-
Mammen Regy, R., Zheng, W., & Mittal, J.
(2021).
Using a sequence-specific coarse-grained model for studying protein liquid-liquid phase separation. METHODS IN ENZYMOLOGY.
LIQUID-LIQUID PHASE COEXISTENCE AND MEMBRANELESS ORGANELLES.
(pp. 1-17).
Elsevier.
-
conference paper
-
Pretti, E., Mao, R., & Mittal, J.
(2019).
Modelling and simulation of DNA-mediated self-assembly for superlattice design. Molecular Simulation.
1203-1210.
-
Dignon, G. L., Zheng, W., Kim, Y., & Mittal, J.
(2019).
A High-Throughput Approach to Phase Separation of Disordered Proteins. Biophysical Journal.
350A-350A.
-
Kim, Y., Maula, T. A., & Mittal, J.
(2019).
Accurate Estimation of Protein-Binding Kinetics using Markov State Models. Biophysical Journal.
303A-303A.
-
Horan, B. G., Vavylonis, D., & Mittal, J.
(2019).
Elucidating Steps in Actin Polymerization and Nucleation using a Coarse-Grained Model of Multiprotein Complex Formation. Biophysical Journal.
551A-552A.
-
Mittal, J.
(2019).
Identifying Sequence-Determinants of Protein Liquid-Liquid Phase Separation. Biophysical Journal.
4A-4A.
-
Schuster, B. S., Dignon, G., Jahnke, C., Good, M. C., Hammer, D. A., & Mittal, J.
(2019).
Sequence Determinants of Protein Phase Separation of the Intrinsically Disordered RGG Domain from LAF-1. Biophysical Journal.
453A-454A.
-
Zheng, W., Dignon, G., Brown, M., Best, R., Kim, Y., & Mittal, J.
(2019).
Models for liquid-liquid phase separation of disordered proteins. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Dignon, G. L., Zheng, W., Kim, Y. C., Mittal, J., & Best, R.
(2018).
Coarse-Grained Simulations of Intrinsically Disordered Proteins in the Context of Liquid-Liquid Phase Separation. Biophysical Journal.
431A-432A.
-
Zheng, W., Zerze, G., Borgia, A., Mittal, J., Schuler, B., & Best, R. B.
(2018).
Inferring Properties of Disordered Chains From FRET Transfer Efficiencies. Biophysical Journal.
367A-367A.
-
Kim, Y., & Mittal, J.
(2018).
Knowledge-Based Coarse-Grained Model for Simulating Multi-protein Complexes. Biophysical Journal.
59A-60A.
-
Horan, B. G., Zerze, G., Dignon, G. L., Kim, Y. C., Vavylonis, D., & Mittal, J.
(2018).
Multiscale Model of the Formin Homology 1 Domain Illustrates its Role in Regulation of Actin Polymerization. Biophysical Journal.
144A-144A.
-
Heller, D. A., Harvey, J. D., Jena, P. V., Williams, R. M., Galassi, T. V., Baker, H. A., ... Mittal, J.
(2017).
Abstract LB-222: A nanoscale optical reporter implant for miRNA biomarkers in vivo. Cancer Research.
lb-222-lb-222.
-
Dignon, G. L., Zheng, W., Best, R., & Mittal, J.
(2017).
A Novel Coarse-Grained Model to Study Liquid-Liquid Phase Separation of Disordered Proteins. Biophysical Journal.
200A-200A.
-
Kim, Y., & Mittal, J.
(2017).
Crowding Induced Coil-Globule Transitions of Intrinsically Disordered Proteins. Biophysical Journal.
511A-511A.
-
Modi, T., Zerze, G. H., Mittal, J., Vaiana, S. M., & Ozkan, S. B.
(2017).
Intrinsically Disordered Protein Dynamics Uncovered through Dynamic Flexibility Index (DFI) Analysis. Biophysical Journal.
209A-209A.
-
Conicella, A. E., Zerze, G. H., Mittal, J., & Fawzi, N. L.
(2016).
ALS Mutations Disrupt Phase Separation Mediated by -Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
1537-1549.
-
Zerze, G., Best, R. B., & Mittal, J.
(2016).
Dynamics of Contact Formation in Disordered Polypeptides. Biophysical Journal.
557A-557A.
-
Kim, Y., & Mittal, J.
(2016).
Quantifying Crowding Effects on Transient Encounter Complex Formation during Protein Binding. Biophysical Journal.
386A-386A.
-
Mittal, J.
(2016).
Structure and dynamics of intrinsically disordered proteins from a physics-based model. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
2a-2a.
-
Zheng, W., Zerze, G., Borgia, A., Borgia, M., Hofmann, H., Schuler, B., Mittal, J., & Best, R.
(2016).
All-atom models for intrinsically disordered proteins: Structure, dynamics and experimental interpretation. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Mittal, J.
(2016).
Atomic-Resolution In-Cell NMR Analysis of Alpha-Synuclein in Mammalian Cells Reveals Disordered Monomer. Biophysical Journal.
2A-2A.
-
Granata, D., Zerze, G., Mittal, J., Vendruscolo, M., & Laio, A.
(2016).
Characterizing the free energy landscape of intrinsically disordered proteins by metadynamics simulation and experiments. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Zerze, G., Vaiana, S., & Mittal, J.
(2016).
Dynamic and structural characterization of intrinsically disordered peptides via molecular simulations. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Kim, Y., Miller, C., & Mittal, J.
(2016).
Macromolecular crowding effects on the intrinsically disordered proteins: A simple model reveals complex behavior. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Best, R., Zheng, W., & Mittal, J.
(2015).
Accurate atomistic simulations of intrinsically disordered proteins. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Sizemore, S. M., Zerze, G. H., Cope, S. M., Mittal, J., & Vaiana, S. M.
(2015).
Comparing Solution Structures of Amylin and CGRP by Nanosecond Laser-Pump Spectroscopy and Atomistic Simulations. Biophysical Journal.
388A-389A.
-
Miller, C. M., Brown, A. C., & Mittal, J.
(2015).
Membrane Cholesterol Association and Structure of Two Leukotoxin Peptides. Biophysical Journal.
552A-553A.
-
Zerze, G. H., Best, R. B., & Mittal, J.
(2015).
Molecular Simulations of Unfolded and Intrinsically Disordered Proteins. Biophysical Journal.
194A-194A.
-
Best, R., Zheng, W., & Mittal, J.
(2015).
Optimized Force Fields for Simulations of Intrinsically Disordered Proteins. Biophysical Journal.
227A-227A.
-
Kim, Y., & Mittal, J.
(2015).
Thermodynamics and Kinetics of Multi-Protein Binding in Crowded Environments. Biophysical Journal.
114A-115A.
-
Zerze, G. H., Miller, C., & Mittal, J.
(2014).
Correlation of Helical Propensity in Amylin Sequences with Known Aggregation Propensity. Biophysical Journal.
483A-483A.
-
de Sancho, D., Mittal, J., & Best, R.
(2012).
Elementary time scales for protein folding: Simulation vs. experiment. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Mittal, J., & Best, R. B.
(2012).
Tackling secondary structure bias in all-atom explicit solvent protein force fields. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
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Bhattacharya, A., & Mittal, J.
(2012).
Transformations in the protein folding landscape by interfacial confinement. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
-
Song, M., Snyder, M. A., & Mittal, J.
(2012).
Water transport through carbon nanotubes with modified water models. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
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Kim, Y., & Mittal, J.
(2012).
Quantitative Theory for Protein-Protein Interactions in a Crowded Environment. Biophysical Journal.
473A-474A.
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Mittal, J.
(2012).
Simulations of biomolecular assembly processes at interfaces. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
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Kim, Y., Best, R. B., & Mittal, J.
(2011).
Bind'NGO: Flexible Docking Model for Multiprotein Complexes with Intrinsically Disordered Segments. Biophysical Journal.
198-198.
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Mittal, J., & Hummer, G.
(2010).
Effects of molecular-scale density fluctuations and surface roughness on hydrophobic hydration. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
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Mittal, J., & Best, R. B.
(2010).
Protein Folding Landscapes for Alpha- and Beta-Miniproteins Using All-Atom Simulations with an Optimized Force-Field. Biophysical Journal.
200A-200A.
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Kim, Y., Best, R. B., & Mittal, J.
(2010).
Replica Exchange Simulations For Macromolecular Crowding Effects on Multiprotein Binding. Biophysical Journal.
57A-57A.
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Pretti, E., Mao, R., & Mittal, J.
(2019).
Modelling and simulation of DNA-mediated self-assembly for superlattice design. Molecular Simulation.
1203-1210.
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institutional repository document
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Mohanty, P., Phan, T. M., & Mittal, J.
(2024).
Transient interdomain interactions modulate the monomeric structural ensemble and oligomerization landscape of Huntingtin Exon 1
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Ozguney, B., Mohanty, P., & Mittal, J.
(2024).
RNA-binding tunes the conformational plasticity and intradomain stability of TDP-43 tandem RNA recognition motifs
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Johnson, C. N., Sojitra, K. A., Sohn, E. J., Moreno-Romero, A. K., Baudin, A., Xu, X., Mittal, J., & Libich, D. S.
(2023).
Insights into Molecular Diversity within the FET Family: Unraveling Phase Separation of the N-Terminal Low Complexity Domain from RNA-Binding Protein EWS
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Gemeinhardt, T. M., Regy, R. M., Mendiola, A. J., Ledterman, H. J., Henrickson, A., Phan, T. M., ... Francis, N. J.
(2023).
How a disordered linker in the Polycomb protein Polyhomeotic tunes phase separation and oligomerization
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Phan, T. M., Kim, Y. C., Debelouchina, G. T., & Mittal, J.
(2023).
Interplay between charge distribution and DNA in shaping HP1 paralog phase separation and localization
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Kapoor, U., Kim, Y. C., & Mittal, J.
(2023).
A coarse-grained DNA model to study protein-DNA interactions and liquid-liquid phase separation
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Chao, T., Rekhi, S., Mittal, J., & Tabor, D. P.
(2023).
Data-Driven Models for Predicting Intrinsically Disordered Protein Polymer Physics Directly from Composition or Sequence
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Rekhi, S., Garcia, C. G., Barai, M., Rizuan, A., Schuster, B. S., Kiick, K. L., & Mittal, J.
(2023).
Expanding the molecular language of protein liquid-liquid phase separation
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Rekhi, S., Devarajan, D. S., Howard, M. P., Kim, Y. C., Nikoubashman, A., & Mittal, J.
(2023).
Role of Strong Localized vs. Weak Distributed Interactions in Disordered Protein Phase Separation
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Mohanty, P., Shenoy, J., Rizuan, A., Ortiz, J., Fawzi, N. L., & Mittal, J.
(2022).
Aliphatic residues contribute significantly to the phase separation of TDP-43 C-terminal domain
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Devarajan, D. S., Rekhi, S., Nikoubashman, A., Kim, Y. C., Howard, M. P., & Mittal, J.
(2022).
Effect of Charge Distribution on the Dynamics of Polyampholytic Disordered Proteins
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Her, C., Phan, T. M., Jovic, N., Kapoor, U., Ackermann, B. E., Rizuan, A., ... Debelouchina, G. T.
(2022).
Molecular interactions underlying the phase separation of HP1: Role of phosphorylation, ligand and nucleic acid binding
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Das, B., Roychowdhury, S., Mohanty, P., Rizuan, A., Mittal, J., & Chattopadhyay, K.
(2022).
Zn-dependent structural transition of SOD1 modulates its ability to undergo liquid-liquid phase separation
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Kelley, F. M., Favetta, B., Regy, R. M., Mittal, J., & Schuster, B. S.
(2021).
Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants
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Zheng, W., Dignon, G. L., Xu, X., Regy, R. M., Fawzi, N. L., Kim, Y. C., Best, R. B., & Mittal, J.
(2020).
Molecular details of protein condensates probed by microsecond-long atomistic simulations
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Regy, R. M., Dignon, G. L., Zheng, W., Kim, Y. C., & Mittal, J.
(2020).
Sequence dependent co-phase separation of RNA-protein mixtures elucidated using molecular simulations
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Perdikari, T. M., Jovic, N., Dignon, G. L., Kim, Y. C., Fawzi, N. L., & Mittal, J.
(2020).
A predictive coarse-grained model for position-specific effects of post-translational modifications on disordered protein phase separation
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Ryan, V. H., Perdikari, T. M., Naik, M. T., Saueressig, C. F., Lins, J., Dignon, G. L., ... Fawzi, N. L.
(2020).
Tyrosine phosphorylation regulates hnRNPA2 granule protein partitioning & reduces neurodegeneration
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Zheng, W., Dignon, G., Brown, M., Kim, Y. C., & Mittal, J.
(2020).
Hydropathy patterning complements charge patterning to describe conformational preferences of disordered proteins
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Schuster, B. S., Dignon, G. L., Tang, W. S., Kelley, F. M., Ranganath, A. K., Jahnke, C. N., ... Mittal, J.
(2020).
Identifying Sequence Perturbations to an Intrinsically Disordered Protein that Determine Its Phase Separation Behavior
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Mao, R., & Mittal, J.
(2020).
The interplay between thermodynamics and kinetics in the self-assembly of DNA functionalized nanoparticles
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Conicella, A. E., Dignon, G. L., Zerze, G. H., Schmidt, H. B., DOrdine, A. M., Kim, Y. C., ... Fawzi, N. L.
(2019).
TDP-43 -helical structure tunes liquid-liquid phase separation and function
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Horan, B. G., Zerze, G. H., Kim, Y. C., Vavylonis, D., & Mittal, J.
(2018).
Computational modeling highlights disordered Formin Homology 1 domains role in profilin-actin transfer
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Dignon, G. L., Zheng, W., Kim, Y. C., Best, R. B., & Mittal, J.
(2017).
Sequence determinants of protein phase behavior from a coarse-grained model
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Jena, P. V., Roxbury, D., Galassi, T. V., Akkari, L., Horoszko, C. P., Iaea, D. B., ... Heller, D. A.
(2017).
A carbon nanotube optical reporter maps endolysosomal lipid flux
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Song, M., Ding, Y., Zerze, H., Snyder, M. A., & Mittal, J.
(2017).
Binary superlattice design by controlling DNA-mediated interactions
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Zerze, G., Mittal, J., & Best, R. B.
(2015).
Diffusive dynamics of contact formation in disordered polypeptides
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Hatch, H. W., Mittal, J., & Shen, V. K.
(2015).
Computational Study of Trimer Self-Assembly and Fluid Phase Behavior
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Ding, Y., & Mittal, J.
(2015).
Insights into DNA-mediated interparticle interactions from a coarse-grained model
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Best, R. B., Miller, C., & Mittal, J.
(2015).
Role of solvation in pressure-induced helix stabilization
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Moskowitz, I., Snyder, M. A., & Mittal, J.
(2015).
Water transport through functionalized nanotubes with tunable hydrophobicity
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Kim, Y. C., & Mittal, J.
(2012).
Crowding induced entropy-enthalpy compensation in protein association equilibria
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Mittal, J., & Hummer, G.
(2012).
Pair diffusion, hydrodynamic interactions, and available volume in dense fluids
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Mittal, J., & Best, R. B.
(2009).
Theory and simulation of macromolecular crowding effects on protein folding stability and kinetics
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Krekelberg, W. P., Kumar, T., Mittal, J., Errington, J. R., & Truskett, T. M.
(2009).
Anomalous structure and dynamics of the Gaussian-core fluid
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Goel, G., Krekelberg, W. P., Pond, M. J., Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M.
(2009).
Available states and available space: Static properties that predict dynamics of confined fluids
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Mittal, J., Truskett, T. M., Errington, J. R., & Hummer, G.
(2008).
Layering and position-dependent diffusive dynamics of confined fluids
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Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M.
(2008).
Structural anomalies of fluids: Origins in second and higher coordination shells
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Mittal, J., Shen, V. K., Errington, J. R., & Truskett, T. M.
(2007).
Cofinement, entropy, and single-particle dynamics of equilibrium hard-sphere mixtures
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Mittal, J., Errington, J. R., & Truskett, T. M.
(2007).
Does confining the hard-sphere fluid between hard walls change its average properties?
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Krekelberg, W. P., Mittal, J., Ganesan, V., & Truskett, T. M.
(2007).
How short-range attractions impact the structural order, self-diffusivity, and viscosity of a fluid
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Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Using Available Volume to Predict Fluid Diffusivity in Random Media
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Mittal, J., Errington, J. R., & Truskett, T. M.
(2006).
Relationship between thermodynamics and dynamics of supercooled liquids
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Mittal, J., Errington, J. R., & Truskett, T. M.
(2005).
Thermodynamics predicts how confinement modifies hard-sphere dynamics
-
Mohanty, P., Phan, T. M., & Mittal, J.
(2024).
Transient interdomain interactions modulate the monomeric structural ensemble and oligomerization landscape of Huntingtin Exon 1
Teaching
teaching activities
- CHEM491 Hnr-research Instructor
- CHEM691 Research Instructor
- CHEN205 Chem Engr Thermo I Instructor
- CHEN354 Chem Engr Thermo Ii Instructor
- CHEN489 Sptp: Molecular Modeling Instructor
- CHEN491 Hnr - Research Instructor
- CHEN491 Hnr-research Instructor
- CHEN623 App Of Thermo To Ch E Instructor
- CHEN684 Professional Internship: In-ab Instructor
- CHEN689 Sptp: Emerg Topic In Biomolec Instructor
- CHEN689 Sptp: Mol Modeling & Simulati Instructor
- CHEN689 Sptp: Molecular Modeling Instructor
- CHEN691 Research Instructor
Contact
first name
- Jeetain
has last name
- Mittal
Other
- jeetain@tamu.edu