HR job title
- Professor
- Contact Info
- 1 979 845 3141
Dabney, Alan Associate Professor
Positions
- Associate Professor, Statistics, College of Arts and Sciences
- Overview
- Publications
- Research
- Teaching
- Works By Students
- Background
- Contact
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Overview
Publications
selected publications
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academicarticle
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Teleb, M. S., Kellner, C. P., Dabney, A. R., Baltan, S., Sohrabji, F., Pennypacker, K. R., ... Fraser, J. F.
(2023).
Abstract Number 25: Acute Ischemic Stroke Intervention With Penumbra RED Reperfusion Catheters: Updated Subset Analysis From INSIGHT Registry. 3(S1),
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Zhang, L., Cervantes, M. D., Pan, S., Lindsley, J., Dabney, A., & Kapler, G. M.
(2023).
Transcriptome analysis of the binucleate ciliate Tetrahymena thermophila with asynchronous nuclear cell cycles. Molecular Biology of the Cell.
34(2), rs1-15.
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Pan, S., Cesarek, M., Godoy, C., Co, C. M., Schindler, C., Padilla, K., ... Gregory, C. A.
(2022).
Morpholino-driven blockade of Dkk-1 in osteosarcoma inhibits bone damage and tumour expansion by multiple mechanisms. British Journal of Cancer.
127(1), 43-55.
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Willis, W. K., Williamson, V. M., Chuu, E., & Dabney, A. R.
(2022).
The Relationship Between a Student's Success in First-Semester General Chemistry and Their Mathematics Fluency, Profile, and Performance on Common Questions. Journal of Science Education and Technology.
31(1), 1-15.
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Yumna, E., Kumar, M. K., Amir, E., Alan, D., Rachel, P., & Farida, S.
(2021).
Sex Differences in Stroke Outcome Are Associated With Constitutive Gut Dysbiosis and Stroke-Induced Gut Permeability. 52(Suppl_1),
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El-Hakim, Y., Mani, K. K., Eldouh, A., Pandey, S., Grimaldo, M. T., Dabney, A., Pilla, R., & Sohrabji, F.
(2021).
Sex differences in stroke outcome correspond to rapid and severe changes in gut permeability in adult Sprague-Dawley rats. 12(1), 14.
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Williamson, V. M., Walker, D. R., Chuu, E., Broadway, S., Mamiya, B., Powell, C. B., ... Mason, D.
(2020).
Impact of basic arithmetic skills on success in first-semester general chemistry. Chemistry Education Research and Practice.
21(1), 51-61.
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Xing, Y., Dabney, A. R., Li, X., Wang, G., Gill, C. A., & Casola, C.
(2020).
SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes. Frontiers in Genetics.
11, 82.
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Boerman, N. A., Hlavinka, K. B., Zhu, W., Dabney, A. R., Hodnett, G. L., & Rooney, W. L.
(2019).
Efficacy of the chemical trifluoromethanesulfonamide as a male gametocide in field-grown sorghum [Sorghum bicolor (L.) Moench]. Euphytica.
215(5), 96.
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Chu, C. P., Hokamp, J. A., Cianciolo, R. E., Dabney, A. R., Brinkmeyer-Langford, C., Lees, G. E., & Nabity, M. B.
(2017).
RNA-seq of serial kidney biopsies obtained during progression of chronic kidney disease from dogs with X-linked hereditary nephropathy. Scientific Reports.
7(1), 16776.
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Zheng, L. e., Crippen, T. L., Dabney, A., Gordy, A., & Tomberlin, J. K.
(2017).
Evaluation of Sterilized Artificial Diets for Mass Rearing the Lucilia sericata (Diptera: Calliphoridae). 54(5), 1122-1128.
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Leroux, T. C., Ct, M. J., Kum, H., Dabney, A., & Wells, R.
(2017).
Transitioning to Patient-Centered Medical Homes: Associations With Appointment Availability. Military Medicine.
182(3), e1741-e1746.
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Leroux, T. C., Kum, H., Dabney, A., & Wells, R.
(2016).
Military Deployments and Mental Health Utilization Among Spouses of Active Duty Service Members. Military Medicine.
181(10), 1269-1274.
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Gershwin, L. J., Van Eenennaam, A. L., Anderson, M. L., McEligot, H. A., Shao, M. X., Toaff-Rosenstein, R., ... Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team.
(2015).
Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex. PLoS ONE.
10(11), e0142479-e0142479.
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Turner, S., & Dabney, A. R.
(2015).
A Story-based Simulation for Teaching Sampling Distributions. 37(1), 23-U36.
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Ball, R. L., Feiveson, A. H., Schlegel, T. T., Starc, V., & Dabney, A. R.
(2014).
Predicting "heart age" using electrocardiography. Journal of Personalized Medicine.
4(1), 65-78.
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Menon, R., Watson, S. E., Thomas, L. N., Allred, C. D., Dabney, A., Azcarate-Peril, M. A., & Sturino, J. M.
(2013).
Diet complexity and estrogen receptor status affect the composition of the murine intestinal microbiota. Applied and Environmental Microbiology.
79(18), 5763-5773.
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Karpievitch, Y. V., Dabney, A. R., & Smith, R. D.
(2012).
Normalization and missing value imputation for label-free LC-MS analysis. BMC Bioinformatics.
13 Suppl 16(Suppl 16), S5.
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Tekwe, C. D., Carroll, R. J., & Dabney, A. R.
(2012).
Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data. Bioinformatics.
28(15), 1998-2003.
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Wang, X., Anderson, G. A., Smith, R. D., & Dabney, A. R
(2012).
A hybrid approach to protein differential expression in mass spectrometry-based proteomics. Bioinformatics.
28(12), 1586-1591.
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Taverner, T., Karpievitch, Y. V., Polpitiya, A. D., Brown, J. N., Dabney, A. R., Anderson, G. A., & Smith, R. D
(2012).
DanteR: an extensible R-based tool for quantitative analysis of -omics data. Bioinformatics.
28(18), 2404-2406.
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Karpievitch, Y. V., Polpitiya, A. D., Anderson, G. A., Smith, R. D., & Dabney, A. R.
(2010).
Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects. Annals of Applied Statistics.
4(4), 1797-1823.
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Karpievitch, Y., Stanley, J., Taverner, T., Huang, J., Adkins, J. N., Ansong, C., ... Dabney, A. R
(2009).
A statistical framework for protein quantitation in bottom-up MS-based proteomics. Bioinformatics.
25(16), 2028-2034.
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Karpievitch, Y. V., Hill, E. G., Leclerc, A. P., Dabney, A. R., & Almeida, J. S.
(2009).
An introspective comparison of random forest-based classifiers for the analysis of cluster-correlated data by way of RF++. PLoS ONE.
4(9), e7087-e7087.
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Karpievitch, Y. V., Taverner, T., Adkins, J. N., Callister, S. J., Anderson, G. A., Smith, R. D., & Dabney, A. R
(2009).
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. Bioinformatics.
25(19), 2573-2580.
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Vanamala, J., Reddivari, L., Tarver, C. C., Murano, P. S., Lupton, J. R., Singh, P., ... Jayaraman, A.
(2008).
Resveratrol Phenotypes Insulin-like Growth Factor Receptor-1 siRNA in the Suppression of IGF-1 Promoted Colon Cancer Cell Proliferation. The FASEB Journal.
22.
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Dabney, A. R., & Storey, J. D.
(2007).
Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships. 8(3), R44-R44.
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Dabney, A. R., & Storey, J. D.
(2007).
Optimality driven nearest centroid classification from genomic data. PLoS ONE.
2(10), e1002-e1002.
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Dabney, A. R., & Storey, J. D
(2007).
A new approach to intensity-dependent normalization of two-channel microarrays. Biostatistics.
8(1), 128-139.
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Leek, J. T., Monsen, E., Dabney, A. R., & Storey, J. D.
(2006).
EDGE: extraction and analysis of differential gene expression (vol 22, pg 507, 2006). Bioinformatics.
22(11), 1412-1412.
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Leek, J. T., Monsen, E., Dabney, A. R., & Storey, J. D
(2006).
EDGE: extraction and analysis of differential gene expression. Bioinformatics.
22(4), 507-508.
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Dabney, A. R., & Storey, J. D.
(2006).
A reanalysis of a published Affymetrix GeneChip control dataset. 7(3), 401-401.
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Dabney, A. R.
(2006).
ClaNC: point-and-click software for classifying microarrays to nearest centroids. Bioinformatics.
22(1), 122-123.
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Dabney, A. R.
(2005).
Classification of microarrays to nearest centroids. 21(22), 4148-4154.
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Dabney, A. R., & Wakefield, J. C.
(2005).
Issues in the mapping of two diseases. Statistical Methods in Medical Research.
14(1), 83-112.
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Stanley, J. R., Adkins, J. N., Slysz, G. W., Monroe, M. E., Purvine, S. O., Karpievitch, Y. V., ... Dabney, A. R
(1989).
A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics. Analytical Chemistry.
83(16), 6135-6140.
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Petyuk, V. A., Jaitly, N., Moore, R. J., Ding, J., Metz, T. O., Tang, K., ... Smith, R. D
(1981).
Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content. Analytical Chemistry.
80(3), 693-706.
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Teleb, M. S., Kellner, C. P., Dabney, A. R., Baltan, S., Sohrabji, F., Pennypacker, K. R., ... Fraser, J. F.
(2023).
Abstract Number 25: Acute Ischemic Stroke Intervention With Penumbra RED Reperfusion Catheters: Updated Subset Analysis From INSIGHT Registry. 3(S1),
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conference paper
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Frei, D., Kellner, C. P., Dabney, A. R., Baltan, S., Sohrabji, F., Pennypacker, K. R., ... Fraser, J. F.
(2022).
P87 Initial experience with Penumbra RED reperfusion catheters for Acute Stroke Intervention: subset analysis from the prospective, multicentres INSIGHT Registry. a43.2-a4a44.
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Fraser, J., Dabney, A., Vicari, J., Rivet, D., Woodward, B., Nanda, A., ... Kellner, C.
(2022).
E-096 COVID status is related to clot burden during thrombectomy in acute stroke patients. a127.2-a1a128.
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Fraser, J., Dabney, A., Vicari, J., Rivet, D., Woodward, B., Nanda, A., ... Kellner, C.
(2022).
E-147 Ephrin receptor beta 1 single nucleotide polymorphisms in association with age in acute stroke patients undergoing thrombectomy. a155.1-a1a155.
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Kellner, C., Dabney, A., Baltan, S., Sohrabji, F., Pennypacker, K., Nanda, A., ... Fraser, J.
(2022).
E-173 Initial experience with penumbra red reperfusion catheters for acute stroke intervention: subset analysis from the prospective, multicenter insight registry. a169.2-a1a171.
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Tekwe, C. D., Dabney, A. R., & Carroll, R. J.
(2013).
Application of Survival Analysis Methodology to the Quantitative Analysis of LC-MS Proteomics Data. Amino Acids.
609-609.
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Tekwe, C. D., Dabney, A. R., & Carroll, R. J.
(2011).
Application of Survival Analysis Methodology to the Quantitative Analysis of LC-MS Proteomics Data. IEEE International Workshop on Genomic Signal Processing and Statistics : [proceedings]. IEEE International Workshop on Genomic Signal Processing and Statistics.
97-100.
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Frei, D., Kellner, C. P., Dabney, A. R., Baltan, S., Sohrabji, F., Pennypacker, K. R., ... Fraser, J. F.
(2022).
P87 Initial experience with Penumbra RED reperfusion catheters for Acute Stroke Intervention: subset analysis from the prospective, multicentres INSIGHT Registry. a43.2-a4a44.
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institutional repository document
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Zhang, L., Cervantes, .., Pan, S., Lindsley, J., Dabney, A., & Kapler, G. M.
(2022).
Transcriptome analysis of the binucleate ciliate Tetrahymena thermophila with asynchronous nuclear cell cycles
-
Pan, S., Cesarek, M., Godoy, C., Co, C., Schindler, C., Padilla, K., ... Gregory, C.
(2021).
Morpholino-driven transcriptional blockade of Dkk-1 in experimental osteosarcoma inhibits bone damage and tumor expansion by multiple mechanisms
-
El-Hakim, Y., Mani, K. K., Eldouh, A., Dabney, A., Pilla, R., & Sohrabji, F.
(2020).
Sex Differences in Stroke Outcome Are Associated With Constitutive Gut Dysbiosis and Stroke-induced Gut Permeability
-
Xing, Y., Dabney, A. R., Li, X., Wang, G., Gill, C. A., & Casola, C.
(2019).
SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences from Reference Genomes
-
Xing, Y., Dabney, A. R., Li, X., & Casola, C.
(2018).
SimulateCNVs: a novel software application for simulating CNVs in WES and WGS data
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Karpievitch, Y. V., Polpitiya, A. D., Anderson, G. A., Smith, R. D., & Dabney, A. R.
(2011).
Liquid chromatography mass spectrometry-based proteomics: Biological and technological aspects
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Zhang, L., Cervantes, .., Pan, S., Lindsley, J., Dabney, A., & Kapler, G. M.
(2022).
Transcriptome analysis of the binucleate ciliate Tetrahymena thermophila with asynchronous nuclear cell cycles
Research
co-principal investigator on
Teaching
teaching activities
- LBAR489 Sptp: Rational Learning Instructor
- SCEN292 Co-op Ed In Scen-dublin Instructor
- STAT182 Foundations Of Statistics Instructor
- STAT201 Elem Stat Inference Instructor
- STAT211 Prin Of Statistics I Instructor
- STAT436 Multivariate Anly And Stat Lrn Instructor
- STAT445 Applied Biostat And Data Analy Instructor
- STAT485 Directed Studies Instructor
- STAT489 Sptp:stat & Data Science Instructor
- STAT491 Research Instructor
- STAT608 Regression Analysis Instructor
- STAT636 Applied Multivariate Anly Instructor
- STAT641 Methods Of Stat I Instructor
- STAT645 Appl Biostat & Data Anly Instructor
- STAT646 Stat Bioinformatics Instructor
- STAT649 Comm Stat Res Teach Consult Instructor
- STAT651 Stat In Research I Instructor
- STAT685 Directed Studies Instructor
- STAT689 Sptp: Comm Skills In Stats Instructor
- STAT691 Research Instructor
- UGST484 Internship: Statistics Instructor
Works By Students
chaired theses and dissertations
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Ball, Robyn Lynn (2013-03). Statistical Methods for High Dimensional Biomedical Data.
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Nikooienejad, Amir (2013-07). Presence / Absence Marker Discovery in RAD Markers for Multiplexed Samples in the Context of Next-Generation Sequencing.
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Tang, Xincheng (2012-02). Alignment of LC-MS Data Using Peptide Features.
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Wang, Xuan (2012-07). Statistical Methods for the Analysis of Mass Spectrometry-based Proteomics Data.
Background
education and training
- Ph.D. in Biostatistics, University of Washington - (Seattle, Washington, United States)
awards and honors
- Presidential Professor for Teaching Excellence Award, conferred by Texas A&M University - (College Station, Texas, United States), 2021
- Association of Former Students College-Level Teaching Distinguished Achievement Award, The, conferred by Texas A&M University - (College Station, Texas, United States), 2011
- Montague Center for Teaching Excellence (CTE) Scholar, conferred by Texas A&M University - (College Station, Texas, United States), 2009
Contact
first name
- Alan
has last name
- Dabney
mailing address
-
Texas A&M University
Department Of Statistics
3143 TAMU
College Station, TX 77843-3143
USA
Other
- adabney@tamu.edu