publication venue for
- PALLAS: Penalized mAximum LikeLihood and pArticle Swarms for Inference of Gene Regulatory Networks From Time Series Data.. 19:1807-1816. 2022
- Network Classification Based on Reducibility With Respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - A Boolean Network Modeling Perspective.. 19:558-568. 2022
- Optimal Bayesian Transfer Learning for Count Data.. 18:644-655. 2021
- A Gaussian Mixture-Model Exploiting Pathway Knowledge for Dissecting Cancer Heterogeneity.. 17:459-468. 2020
- In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer.. 17:1010-1018. 2020
- Robust Recurrent CNV Detection in the Presence of Inter-Subject Variability.. 17:1056-1067. 2020
- Adaptive Particle Filtering for Fault Detection in Partially-Observed Boolean Dynamical Systems.. 17:1105-1114. 2020
- Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification.. 16:524-537. 2019
- Deep Sequencing Data Analysis. 15:482-483. 2018
- Computational Prediction of Pathogenic Network Modules in Fusarium verticillioides.. 15:506-515. 2018
- Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification.. 15:484-493. 2018
- Optimal Fault Detection and Diagnosis in Transcriptional Circuits Using Next-Generation Sequencing.. 15:516-525. 2018
- SparseNCA: Sparse Network Component Analysis for Recovering Transcription Factor Activities with Incomplete Prior Information.. 15:387-395. 2018
- Classification of State Trajectories in Gene Regulatory Networks.. 15:68-82. 2018
- Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error.. 15:218-230. 2018
- An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification.. 12:1304-1321. 2015
- Statistical Detection of Intrinsically Multivariate Predictive Genes.. 12:951-963. 2015
- Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes.. 12:92-102. 2015
- Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012).. 11:981-983. 2014
- A probabilistic latent semantic analysis model for coclustering the mouse brain atlas.. 10:1460-1468. 2013
- Statistical detection of boolean regulatory relationships.. 10:1310-1321. 2013
- Parameter estimation of biological phenomena: an unscented Kalman filter approach.. 10:537-543. 2013
- Fuzzy intervention in biological phenomena.. 9:1819-1825. 2012
- Multiscale denoising of biological data: a comparative analysis.. 9:1539-1544. 2012
- Guest editors introduction to the special section on bioinformatics research and applications.. 9:1002-1003. 2012
- Inferring gene regulatory networks via nonlinear state-space models and exploiting sparsity.. 9:1203-1211. 2012
- Drosophila gene expression pattern annotation through multi-instance multi-label learning.. 9:98-112. 2012
- A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.. 8:607-620. 2011
- Inferring connectivity of genetic regulatory networks using information-theoretic criteria.. 5:262-274. 2008
- Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty. 2015
- Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification. 2014