publication venue for
- A Bayesian Network-Based Approach to Selection of Intervention Points in the Mitogen-Activated Protein Kinase Plant Defense Response Pathway.. 24:327-339. 2017
- Finding alignments of conserved graphlets in protein interaction networks.. 21:234-246. 2014
- Identifying complexes from protein interaction networks according to different types of neighborhood density.. 19:1284-1294. 2012
- Supervised protein family classification and new family construction.. 19:957-967. 2012
- Motif finding in DNA sequences based on skipping nonconserved positions in background Markov chains.. 18:759-770. 2011
- Identifying gene clusters within localized regions in multiple genomes.. 17:657-668. 2010
- Querying pathways in protein interaction networks based on hidden Markov models.. 16:145-157. 2009
- Real-time gene expression: statistical challenges in design and inference.. 15:611-623. 2008
- Validation of a mathematical model of gene transcription in aggregated cellular systems: application to l1 retrotransposition.. 14:339-349. 2007
- Path matching and graph matching in biological networks.. 14:56-67. 2007
- Gene clustering based on clusterwide mutual information.. 11:147-161. 2004
- Inference from clustering with application to gene-expression microarrays.. 9:105-126. 2002
- Strong feature sets from small samples.. 9:127-146. 2002
- Decoy Database Improvement for Protein Folding. 2015
- Multiple sequence alignment based on profile alignment of intermediate sequences. 2008
- Simulating protein motions with rigidity analysis. 2007
- A polynomial time solvable formulation of multiple sequence alignment. 2006
- Using motion planning to study RNA folding kinetics. 2005
- Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. 2003
- Using motion planning to study protein folding pathways. 2002
- Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. 1997