HR job title
- Professor
- Contact Info
- 1 979 862 2879
Raudsepp, Terje Professor
Positions
Comparative genomics and molecular cytogenetics of animals, birds and other vertebrates organization, function and evolution of sex chromosomes; equine genomics - genomics of genetic diseases and disorders of sexual development and reproduction; alpaca and camelid genomics.
Research Areas
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- Publications
- Research
- Teaching
- Works By Students
- Background
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Overview
Publications
selected publications
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academic article
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Castaneda, C., Juras, R., Kjllerstrm, J., Hernandez Aviles, C., Teague, S. R., Love, C. C., ... Raudsepp, T.
(2021).
Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire. 52(6), 813-823.
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Muscatello, L. V., Oto, E. D., Dignazzi, M., Murphy, W. J., Porcellato, I., De Maria, R., ... Brunetti, B.
(2021).
HER2 Overexpression and Amplification in Feline Pulmonary Carcinoma. Veterinary Pathology.
58(3), 527-530.
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Jevit, M. J., Davis, B. W., Castaneda, C., Hillhouse, A., Juras, R., Trifonov, V. A., ... Raudsepp, T.
(2021).
An 8.22 Mb Assembly and Annotation of the Alpaca (Vicugna pacos) Y Chromosome. Genes.
12(1), 105-105.
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Bugno-Poniewierska, M., & Raudsepp, T.
(2021).
Horse Clinical Cytogenetics: Recurrent Themes and Novel Findings. Animals.
11(3), 831-831.
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Donnelly, C. G., Bellone, R. R., Hales, E. N., Nguyen, A., Katzman, S. A., Dujovne, G. A., ... Finno, C. J.
(2021).
Generation of a Biobank From Two Adult Thoroughbred Stallions for the Functional Annotation of Animal Genomes Initiative. Frontiers in Genetics.
12, 650305.
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Hughes, J. F., Skaletsky, H., Pyntikova, T., Koutseva, N., Raudsepp, T., Brown, L. G., ... Page, D. C.
(2020).
Sequence analysis in Bos taurus reveals pervasiveness of X-Y arms races in mammalian lineages. Genome Research.
30(12), 1716-1726.
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Ghosh, S., Davis, B. W., Rosengren, M., Jevit, M. J., Castaneda, C., Arnold, C., ... Raudsepp, T.
(2020).
Characterization of A Homozygous Deletion of Steroid Hormone Biosynthesis Genes in Horse Chromosome 29 as A Risk Factor for Disorders of Sex Development and Reproduction. Genes.
11(3), 251-251.
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Mendoza, M. N., Raudsepp, T., More, M. J., Gutirrez, G. A., & Ponce de Len, F. A.
(2020).
Cytogenetic Mapping of 35 New Markers in the Alpaca (Vicugna pacos). Genes.
11(5), 522-522.
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Pinzon-Arteaga, C., Snyder, M. D., Lazzarotto, C. R., Moreno, N. F., Juras, R., Raudsepp, T., ... Long, C. R.
(2020).
Efficient correction of a deleterious point mutation in primary horse fibroblasts with CRISPR-Cas9. Scientific Reports.
10(1), 7411.
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Raudsepp, T.
(2020).
Genetics of Equine Reproductive Diseases. Veterinary Clinics of North America: Equine Practice.
36(2), 395-409.
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Suryamohan, K., Krishnankutty, S. P., Guillory, J., Jevit, M., Schrder, M. S., Wu, M., ... Seshagiri, S.
(2020).
The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins. Nature Genetics.
52(1), 106-117.
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Shilton, C. A., Kahler, A., Davis, B. W., Crabtree, J. R., Crowhurst, J., McGladdery, A. J., ... de Mestre, A. M.
(2020).
Whole genome analysis reveals aneuploidies in early pregnancy loss in the horse. Scientific Reports.
10(1), 13314.
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Mendoza, M. N., Schalnus, S. A., Thomson, B., Bellone, R. R., Juras, R., & Raudsepp, T.
(2020).
Novel Complex Unbalanced Dicentric X-Autosome Rearrangement in a Thoroughbred Mare with a Mild Effect on the Phenotype. Cytogenetic and Genome Research.
160(10), 597-609.
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Ghosh, S., Carden, C. F., Juras, R., Mendoza, M. N., Jevit, M. J., Castaneda, C., ... Raudsepp, T.
(2020).
Two Novel Cases of Autosomal Translocations in the Horse: Warmblood Family Segregating t(4;30) and a Cloned Arabian with a de novo t(12;25). 160(11-12), 688-697.
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Ruiz, A. J., Castaneda, C., Raudsepp, T., & Tibary, A.
(2019).
Azoospermia and Y Chromosome-Autosome Translocation in aFriesian Stallion. Journal of Equine Veterinary Science.
82, 102781-102781.
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Castaneda, C., Juras, R., Khanshour, A., Randlaht, I., Wallner, B., Rigler, D., ... Cothran, E. G.
(2019).
Population Genetic Analysis of the Estonian Native Horse Suggests Diverse and Distinct Genetics, Ancient Origin and Contribution from Unique Patrilines. Genes.
10(8), 629-629.
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Felkel, S., Vogl, C., Rigler, D., Dobretsberger, V., Chowdhary, B. P., Distl, O., ... Wallner, B.
(2019).
The horse Y chromosome as an informative marker for tracing sire lines. Scientific Reports.
9(1), 6095.
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Baily, M. P., Avila, F., Das, P. J., Kutzler, M. A., & Raudsepp, T.
(2019).
An Autosomal Translocation 73,XY,t(12;20)(q11;q11) in an Infertile Male Llama (Lama glama) With Teratozoospermia. Frontiers in Genetics.
10(MAR), 344.
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Mendoza, M. N., Raudsepp, T., Alshanbari, F., Gutirrez, G., & Ponce de Len, F. A.
(2019).
Chromosomal Localization of Candidate Genes for Fiber Growth and Color in Alpaca (Vicugna pacos). Frontiers in Genetics.
10(JUN), 583.
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Richardson, M. F., Munyard, K., Croft, L. J., Allnutt, T. R., Jackling, F., Alshanbari, F., ... Raudsepp, T.
(2019).
Chromosome-Level Alpaca Reference Genome VicPac3.1 Improves Genomic Insight Into the Biology of New World Camelids. Frontiers in Genetics.
10(JUN), 586.
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Alshanbari, F., Castaneda, C., Juras, R., Hillhouse, A., Mendoza, M. N., Gutirrez, G. A., Ponce de Len, F. A., & Raudsepp, T.
(2019).
Comparative FISH-Mapping of MC1R, ASIP, and TYRP1 in New and Old World Camelids and Association Analysis With Coat Color Phenotypes in the Dromedary (Camelus dromedarius). Frontiers in Genetics.
10(MAR), 340.
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Brashear, W. A., Raudsepp, T., & Murphy, W. J.
(2018).
Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation. Genome Research.
28(12), 1841-1851.
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Burns, E. N., Bordbari, M. H., Mienaltowski, M. J., Affolter, V. K., Barro, M. V., Gianino, F., ... Finno, C. J.
(2018).
Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project. Animal Genetics.
49(6), 564-570.
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Albarella, S., De Lorenzi, L., Catone, G., Magi, G. E., Petrucci, L., Vullo, C., ... Peretti, V.
(2018).
Diagnosis of XX/XY Blood Cell Chimerism at a Low Percentage in Horses. Journal of Equine Veterinary Science.
69, 129-135.
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Knight, C. G., Ghosh, S., Pang, D., Gunn, M., Raudsepp, T., & Meyers-Wallen, V. N.
(2018).
Pathology in Practice. Journal of the American Veterinary Medical Association.
253(4), 427-429.
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Perelman, P. L., Pichler, R., Gaggl, A., Larkin, D. M., Raudsepp, T., Alshanbari, F., ... Periasamy, K.
(2018).
Construction of two whole genome radiation hybrid panels for dromedary (Camelus dromedarius): 5000RAD and 15000RAD. Scientific Reports.
8(1), 1982.
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Janeka, J. E., Davis, B. W., Ghosh, S., Paria, N., Das, P. J., Orlando, L., ... Raudsepp, T.
(2018).
Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes. Nature Communications.
9(1), 2945.
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Alkhilaiwi, F., Wang, L., Zhou, D., Raudsepp, T., Ghosh, S., Paul, S., ... Yuan, H.
(2018).
Long-term expansion of primary equine keratinocytes that maintain the ability to differentiate into stratified epidermis. Stem Cell Research and Therapy.
9(1), 181.
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Adega, F., Matoso Silva, R., Kjllerstrm, H. J., Vercammen, P., Raudsepp, T., Collares-Pereira, M. J., ... Chaves, R.
(2018).
Comparative Chromosome Painting in Genets (Carnivora, Viverridae, Genetta), the Only Known Feliforms with a Highly Rearranged Karyotype. Cytogenetic and Genome Research.
156(1), 35-44.
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Brown, E. A., Dickinson, P. J., Mansour, T., Sturges, B. K., Aguilar, M., Young, A. E., ... Bannasch, D. L.
(2017).
FGF4 retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs. Proceedings of the National Academy of Sciences of the United States of America.
114(43), 11476-11481.
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Fenn, D. J., Raudsepp, T., Cothran, E. G., Hamilton, N. A., & Haase, B.
(2017).
Validation of a candidate causative mutation for white spotting in donkeys. Animal Genetics.
48(1), 124-125.
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Neupane, M., Moss, K. D., Avila, F., Raudsepp, T., Marron, B. M., Beever, J. E., ... Neibergs, H. L.
(2017).
Case Study: Polymelia in a Holstein calf. Professional Animal Scientist.
33(3), 378-386.
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Rafati, N., Andersson, L. S., Mikko, S., Feng, C., Raudsepp, T., Pettersson, J., ... Rubin, C.
(2016).
Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies. G3: Genes, Genomes, Genetics.
6(7), 2213-2223.
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Ghosh, S., Das, P. J., McQueen, C. M., Gerber, V., Swiderski, C. E., Lavoie, J., Chowdhary, B. P., & Raudsepp, T.
(2016).
Analysis of genomic copy number variation in equine recurrent airway obstruction (heaves). Animal Genetics.
47(3), 334-344.
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Kjllerstrm, H. J., do Mar Oom, M., Chowdhary, B. P., & Raudsepp, T.
(2016).
Fertility Assessment in Sorraia Stallions by Sperm-Fish and Fkbp6 Genotyping. Reproduction in Domestic Animals: physiology, pathology, biotechnology.
51(3), 351-359.
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Staiger, E. A., Al Abri, M. A., Pflug, K. M., Kalla, S. E., Ainsworth, D. M., Miller, D., ... Brooks, S. A.
(2016).
Skeletal variation in Tennessee Walking Horses maps to the LCORL/NCAPG gene region. Physiological Genomics.
48(5), 325-335.
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Ghosh, S., Das, P. J., Avila, F., Thwaits, B. K., Chowdhary, B. P., & Raudsepp, T.
(2016).
A Non-Reciprocal Autosomal Translocation 64,XX, t(4;10)(q21;p15) in an Arabian Mare with Repeated Early Embryonic Loss. Reproduction in Domestic Animals: physiology, pathology, biotechnology.
51(1), 171-174.
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Raudsepp, T., & Chowdhary, B. P.
(2016).
Chromosome Aberrations and Fertility Disorders in Domestic Animals. Annual Review of Animal Biosciences.
4(1), 15-43.
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Seibold-Torres, C., Owens, E., Chowdhary, R., Ferguson-Smith, M. A., Tizard, I., & Raudsepp, T.
(2015).
Comparative Cytogenetics of the Congo African Grey Parrot (Psittacus erithacus). Cytogenetic and Genome Research.
147(2-3), 144-153.
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Raudsepp, T., & Chowdhary, B. P.
(2015).
The Eutherian Pseudoautosomal Region. Cytogenetic and Genome Research.
147(2-3), 81-94.
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Avila, F., Baily, M. P., Merriwether, D. A., Trifonov, V. A., Rubes, J., Kutzler, M. A., ... Raudsepp, T.
(2015).
A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
23(2), 237-251.
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Webb, S. J., Zychowski, G. V., Bauman, S. W., Higgins, B. M., Raudsepp, T., Gollahon, L. S., ... Godard-Codding, C.
(2014).
Establishment, characterization, and toxicological application of loggerhead sea turtle (Caretta caretta) primary skin fibroblast cell cultures. Environmental Science and Technology.
48(24), 14728-14737.
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Avila, F., Baily, M. P., Perelman, P., Das, P. J., Pontius, J., Chowdhary, R., ... Raudsepp, T.
(2014).
A comprehensive whole-genome integrated cytogenetic map for the alpaca (Lama pacos). Cytogenetic and Genome Research.
144(3), 196-207.
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Ghosh, S., Qu, Z., Das, P. J., Fang, E., Juras, R., Cothran, E. G., ... Raudsepp, T.
(2014).
Copy number variation in the horse genome. 10(10), e1004712-e1004712.
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Lear, T. L., Raudsepp, T., Lundquist, J. M., & Brown, S. E.
(2014).
Repeated Early Embryonic Loss in a Thoroughbred Mare with a Chromosomal Translocation [64,XX,t(2;13)]. Journal of Equine Veterinary Science.
34(6), 805-809.
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Avila, F., Das, P. J., Kutzler, M., Owens, E., Perelman, P., Rubes, J., ... Raudsepp, T.
(2014).
Development and application of camelid molecular cytogenetic tools. 105(6), 858-869.
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Al-Jaru, A., Goodwin, W., Skidmore, J., Raudsepp, T., & Khazanehdari, K.
(2014).
Male horse meiosis: metaphase I chromosome configuration and chiasmata distribution. 143(4), 225-231.
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Fellows, E., Kutzler, M., Avila, F., Das, P. J., & Raudsepp, T.
(2014).
Ovarian dysgenesis in an alpaca with a minute chromosome 36. 105(6), 870-874.
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Li, G., Davis, B. W., Raudsepp, T., Pearks Wilkerson, A. J., Mason, V. C., Ferguson-Smith, M., ... Murphy, W. J.
(2013).
Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Research.
23(9), 1486-1495.
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Stafuzza, N. B., Greco, A. J., Grant, J. R., Abbey, C. A., Gill, C. A., Raudsepp, T., ... Amaral, M.
(2013).
A high-resolution radiation hybrid map of the river buffalo major histocompatibility complex and comparison with BoLA. Animal Genetics.
44(4), 369-376.
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Seabury, C. M., Dowd, S. E., Seabury, P. M., Raudsepp, T., Brightsmith, D. J., Liboriussen, P., ... Tizard, I. R.
(2013).
A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao). PLoS ONE.
8(5), e62415-e62415.
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Das, P. J., McCarthy, F., Vishnoi, M., Paria, N., Gresham, C., Li, G., ... Raudsepp, T.
(2013).
Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq. PLoS ONE.
8(2), e56535-e56535.
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Wang, F., Ekiert, D. C., Ahmad, I., Yu, W., Zhang, Y., Bazirgan, O., ... Smider, V. V.
(2013).
Reshaping antibody diversity. Cell.
153(6), 1379-1393.
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Das, P. J., Mishra, D. K., Ghosh, S., Avila, F., Johnson, G. A., Chowdhary, B. P., & Raudsepp, T.
(2013).
Comparative organization and gene expression profiles of the porcine pseudoautosomal region. Cytogenetic and Genome Research.
141(1), 26-36.
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Raudsepp, T., McCue, M. E., Das, P. J., Dobson, L., Vishnoi, M., Fritz, K. L., ... Chowdhary, B. P.
(2012).
Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions. 8(12), e1003139-e1003139.
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Ferrer, M. S., Anderson, D. E., Jones, M. L., Miesner, M. D., Raudsepp, T., Avila, F., & Kutzler, M. A.
(2012).
Theriogenology question of the month. Segmental aplasia of the uterine horn with mucometra. Journal of the American Veterinary Medical Association.
241(6), 697-700.
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Das, P. J., Lyle, S. K., Beehan, D., Chowdhary, B. P., & Raudsepp, T.
(2012).
Cytogenetic and molecular characterization of Y isochromosome in a 63XO/64Xi(Yq) mosaic karyotype of an intersex horse. 6(1-3), 117-127.
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Raudsepp, T., Das, P. J., Avila, F., & Chowdhary, B. P.
(2012).
The pseudoautosomal region and sex chromosome aneuploidies in domestic species. Sexual Development.
6(1-3), 72-83.
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Paria, N., Raudsepp, T., Pearks Wilkerson, A. J., O'Brien, P., Ferguson-Smith, M. A., Love, C. C., ... Chowdhary, B. P.
(2011).
A gene catalogue of the euchromatic male-specific region of the horse Y chromosome: comparison with human and other mammals. PLoS ONE.
6(7), e21374-e21374.
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Raudsepp, T., Durkin, K., Lear, T. L., Das, P. J., Avila, F., Kachroo, P., & Chowdhary, B. P.
(2010).
Molecular heterogeneity of XY sex reversal in horses. Animal Genetics.
41 Suppl 2(SUPPL. 2), 41-52.
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Das, P. J., Paria, N., Gustafson-Seabury, A., Vishnoi, M., Chaki, S. P., Love, C. C., ... Raudsepp, T.
(2010).
Total RNA isolation from stallion sperm and testis biopsies. THERIOGENOLOGY.
74(6), 1099-1106e2.
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Juras, R., Raudsepp, T., Das, P. J., Conant, E., & Cothran, E. G.
(2010).
XX/XY Blood Lymphocyte Chimerism in Heterosexual Dizygotic Twins from an American Bashkir Curly Horse. Case Report. Journal of Equine Veterinary Science.
30(10), 575-580.
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Wade, C. M., Giulotto, E., Sigurdsson, S., Zoli, M., Gnerre, S., Imsland, F., ... Lindblad-Toh, K.
(2009).
Genome sequence, comparative analysis, and population genetics of the domestic horse. Science.
326(5954), 865-867.
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Schneider, D. A., Tibary, A., Raudsepp, T., Das, P. J., & O'Rourke, K. I.
(2009).
Blood chimerism confounds genetic relative susceptibility testing for classical scrapie in sheep. Journal of Veterinary Diagnostic Investigation.
21(3), 295-305.
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Alizadeh, A., Hong, L. Z., Kaelin, C. B., Raudsepp, T., Manuel, H., & Barsh, G. S.
(2009).
Genetics of Sex-linked yellow in the Syrian hamster. Genetics.
181(4), 1427-1436.
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Brinkmeyer-Langford, C. L., Childers, C. P., Fritz, K. L., Gustafson-Seabury, A. L., Cothran, M., Raudsepp, T., Womack, J. E., & Skow, L. C.
(2009).
A high resolution RH map of the bovine major histocompatibility complex. BMC GENOMICS.
10(1), 182.
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Davis, B. W., Raudsepp, T., Pearks Wilkerson, A. J., Agarwala, R., Schffer, A. A., Houck, M., Chowdhary, B. P., & Murphy, W. J.
(2009).
A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics.
93(4), 299-304.
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Liu, J., Westhusin, M., Johnson, G., Raudsepp, T., Chowdhary, B., Burghardt, R., Long, C., & Kraemer, D.
(2009).
Evaluation of culture systems for attachment and proliferation of epithelial cells cultured from ovine semen. Animal Reproduction Science.
115(1-4), 49-57.
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Di Meo, G. P., Perucatti, A., Peretti, V., Incarnato, D., Ciotola, F., Liotta, L., ... Iannuzzi, L.
(2009).
The 450-band resolution G- and R-banded standard karyotype of the donkey (Equus asinus, 2n = 62). Cytogenetic and Genome Research.
125(4), 266-271.
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Das, P. J., Chowdhary, B. P., & Raudsepp, T.
(2009).
Characterization of the bovine pseudoautosomal region and comparison with sheep, goat, and other mammalian pseudoautosomal regions. Cytogenetic and Genome Research.
126(1-2), 139-147.
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Brinkmeyer-Langford, C., Raudsepp, T., Gustafson-Seabury, A., & Chowdhary, B. P.
(2008).
A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Cytogenetic and Genome Research.
120(1-2), 164-172.
-
Chowdhary, B. P., & Raudsepp, T.
(2008).
The horse genome derby: racing from map to whole genome sequence. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
16(1), 109-127.
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Raudsepp, T., Gustafson-Seabury, A., Durkin, K., Wagner, M. L., Goh, G., Seabury, C. M., ... Chowdhary, B. P.
(2008).
A 4,103 marker integrated physical and comparative map of the horse genome. Cytogenetic and Genome Research.
122(1), 28-36.
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Pearks Wilkerson, A. J., Raudsepp, T., Graves, T., Albracht, D., Warren, W., Chowdhary, B. P., Skow, L. C., & Murphy, W. J.
(2008).
Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome. Genomics.
92(5), 329-338.
-
Chowdhary, B. P., Paria, N., & Raudsepp, T.
(2008).
Potential applications of equine genomics in dissecting diseases and fertility. Animal Reproduction Science.
107(3-4), 208-218.
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Raudsepp, T., & Chowdhary, B. P.
(2008).
The horse pseudoautosomal region (PAR): characterization and comparison with the human, chimp and mouse PARs. Cytogenetic and Genome Research.
121(2), 102-109.
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Momozawa, Y., Takeuchi, Y., Tozaki, T., Kikusui, T., Hasegawa, T., Raudsepp, T., ... Mori, Y.
(2007).
SNP detection and radiation hybrid mapping in horses of nine candidate genes for temperament. Animal Genetics.
38(1), 81-83.
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Hansen, G. R., Abbey, C. A., Gaile, D. P., Raudsepp, T., Chowdhary, B. P., Womack, J. E., & Gill, C. A.
(2007).
Assignment of six genes to bovine chromosomes 5 and 16 by fluorescence in situ hybridization, radiation hybrid mapping and genetic linkage analysis. Cytogenetic and Genome Research.
116(3), 194-197.
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Chiang, H., Zhou, H., Raudsepp, T., Jesudhasan, P. R., & Zhu, J. J.
(2007).
Chicken CD69 and CD94/NKG2-like genes in a chromosomal region syntenic to mammalian natural killer gene complex. Immunogenetics.
59(7), 603-611.
-
Goh, G., Raudsepp, T., Durkin, K., Wagner, M. L., Schffer, A. A., Agarwala, R., ... Chowdhary, B. P.
(2007).
High-resolution gene maps of horse chromosomes 14 and 21: additional insights into evolution and rearrangements of HSA5 homologs in mammals. Genomics.
89(1), 89-112.
-
Dranchak, P. K., Ekenstedt, K. J., Valberg, S. J., Chowdhary, B. P., Raudsepp, T., & Mickelson, J. R.
(2006).
Chromosomal assignments for the equine AMPK family genes. Animal Genetics.
37(3), 293-294.
-
Momozawa, Y., Takeuchi, Y., Tozaki, T., Kikusui, T., Hasegawa, T., Raudsepp, T., ... Mori, Y.
(2006).
Polymorphism identification, RH mapping, and association analysis with the anxiety trait of the equine serotonin transporter (SLC6A4) gene. Journal of Veterinary Medical Science.
68(6), 619-621.
-
Perrocheau, M., Boutreux, V., Chadi, S., Mata, X., Decaunes, P., Raudsepp, T., ... Gurin, G.
(2006).
Construction of a medium-density horse gene map. Animal Genetics.
37(2), 145-155.
-
Wagner, M. L., Raudsepp, T., Goh, G., Agarwala, R., Schaffer, A. A., Dranchak, P. K., ... Mickelson, J. R.
(2006).
A 1.3-Mb interval map of equine homologs of HSA2. Cytogenetic and Genome Research.
112(3-4), 227-234.
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Carbone, L., Nergadze, S. G., Magnani, E., Misceo, D., Francesca Cardone, M., Roberto, R., ... Giulotto, E.
(2006).
Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics.
87(6), 777-782.
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Murphy, W. J., Pearks Wilkerson, A. J., Raudsepp, T., Agarwala, R., Schffer, A. A., Stanyon, R., & Chowdhary, B. P.
(2006).
Novel gene acquisition on carnivore Y chromosomes. 2(3), e43-363.
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Swinburne, J. E., Boursnell, M., Hill, G., Pettitt, L., Allen, T., Chowdhary, B., ... Binns, M.
(2006).
Single linkage group per chromosome genetic linkage map for the horse, based on two three-generation, full-sibling, crossbred horse reference families. Genomics.
87(1), 1-29.
-
Murphy, W. J., Larkin, D. M., Everts-van der Wind, A., Bourque, G., Tesler, G., Auvil, L., ... Lewin, H. A.
(2005).
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science.
309(5734), 613-617.
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Momozawa, Y., Takeuchi, Y., Tozaki, T., Kikusui, T., Hasegawa, T., Raudsepp, T., ... Mori, Y.
(2005).
Sequence, detection of polymorphisms and radiation hybrid mapping of the equine catechol-o-methyltransferase gene. Animal Genetics.
36(2), 190-190.
-
Brinkmeyer-Langford, C., Raudsepp, T., Lee, E., Goh, G., Schffer, A. A., Agarwala, R., ... Chowdhary, B. P.
(2005).
A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals. MAMMALIAN GENOME.
16(8), 631-649.
-
Gustafson-Seabury, A., Raudsepp, T., Goh, G., Kata, S. R., Wagner, M. L., Tozaki, T., ... Chowdhary, B. P.
(2005).
High-resolution RH map of horse chromosome 22 reveals a putative ancestral vertebrate chromosome. Genomics.
85(2), 188-200.
-
Lagerstrm, M. C., Fredriksson, R., Bjarnadttir, T. K., Fridmanis, D., Holmquist, T., Andersson, J., ... Schith, H. B.
(2005).
Origin of the prolactin-releasing hormone (PRLH) receptors: evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution. Genomics.
85(6), 688-703.
-
Wagner, M. L., Goh, G., Wu, J. T., Morrison, L. Y., Alexander, L. J., Raudsepp, T., ... Mickelson, J. R.
(2004).
Sixty-seven new equine microsatellite loci assigned to the equine radiation hybrid map. Animal Genetics.
35(6), 484-486.
-
Mickelson, J. R., Wagner, M. L., Goh, G., Wu, J. T., Morrison, L. Y., Alexander, L. J., ... Binns, M. M.
(2004).
Thirty-five new equine microsatellite loci assigned to genetic linkage and radiation hybrid maps. Animal Genetics.
35(6), 481-484.
-
Halbert, N. D., Raudsepp, T., Chowdhary, B. P., & Derr, J. N.
(2004).
Conservation genetic analysis of the Texas State Bison Herd. JOURNAL OF MAMMALOGY.
85(5), 924-931.
-
Raudsepp, T., Santani, A., Wallner, B., Kata, S. R., Ren, C., Zhang, H., ... Chowdhary, B. P.
(2004).
A detailed physical map of the horse Y chromosome. Proceedings of the National Academy of Sciences of the United States of America.
101(25), 9321-9326.
-
Wagner, M. L., Goh, G., Wu, J. T., Raudsepp, T., Morrison, L. Y., Alexander, L. J., ... Mickelson, J. R.
(2004).
Radiation hybrid mapping of 63 previously unreported equine microsatellite loci. Animal Genetics.
35(2), 159-162.
-
Takahashi, T., Yawata, M., Raudsepp, T., Lear, T. L., Chowdhary, B. P., Antczak, D. F., & Kasahara, M.
(2004).
Natural killer cell receptors in the horse: evidence for the existence of multiple transcribed LY49 genes. European Journal of Immunology.
34(3), 773-784.
-
Raudsepp, T., Lee, E., Kata, S. R., Brinkmeyer, C., Mickelson, J. R., Skow, L. C., Womack, J. E., & Chowdhary, B. P.
(2004).
Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping. Proceedings of the National Academy of Sciences of the United States of America.
101(8), 2386-2391.
-
Wagner, M. L., Goh, G., Wu, J. T., Raudsepp, T., Morrison, L. Y., Alexander, L. J., ... Mickelson, J. R.
(2004).
Radiation hybrid mapping of 75 previously unreported equine microsatellite loci. Animal Genetics.
35(1), 68-71.
-
Lee, E., Raudsepp, T., Kata, S. R., Adelson, D., Womack, J. E., Skow, L. C., & Chowdhary, B. P.
(2004).
A 1.4-Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genomics.
83(2), 203-215.
-
Gustafson, A. L., Tallmadge, R. L., Ramlachan, N., Miller, D., Bird, H., Antczak, D. F., ... Skow, L. C.
(2003).
An ordered BAC contig map of the equine major histocompatibility complex. Cytogenetic and Genome Research.
102(1-4), 189-195.
-
Ward, T. L., Valberg, S. J., Lear, T. L., Gurin, G., Milenkovic, D., Swinburne, J. E., ... Mickelson, J. R.
(2003).
Genetic mapping of GBE1 and its association with glycogen storage disease IV in American Quarter horses. Cytogenetic and Genome Research.
102(1-4), 201-206.
-
Jrgensen, C. B., Cirera, S., Anderson, S. I., Archibald, A. L., Raudsepp, T., Chowdhary, B., ... Fredholm, M.
(2003).
Linkage and comparative mapping of the locus controlling susceptibility towards E. COLI F4ab/ac diarrhoea in pigs. Cytogenetic and Genome Research.
102(1-4), 157-162.
-
Raudsepp, T., Kata, S. R., Piumi, F., Swinburne, J., Womack, J. E., Skow, L. C., & Chowdhary, B. P.
(2003).
Conservation of gene order between horse and human X chromosomes as evidenced through radiation hybrid mapping (vol 79, pg 451, 2002). 82(4), 501-501.
-
Chowdhary, B. P., Raudsepp, T., Kata, S. R., Goh, G., Millon, L. V., Allan, V., ... Skow, L. C.
(2003).
Erratum: The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes (Genome Research (2003) vol. 13 (742-751)). Genome Research.
13(6 A), 1258.
-
Chowdhary, B. P., Raudsepp, T., Kata, S. R., Goh, G., Millon, L. V., Allan, V., ... Skow, L. C.
(2003).
The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes. Genome Research.
13(4), 742-751.
-
Cirera, S., Jrgensen, C. B., Sawera, M., Raudsepp, T., Chowdhary, B. P., & Fredholm, M.
(2003).
Comparative mapping in the pig: localization of 214 expressed sequence tags. MAMMALIAN GENOME.
14(6), 405-426.
-
Schith, H. B., Raudsepp, T., Ringholm, A., Fredriksson, R., Takeuchi, S., Larhammar, D., & Chowdhary, B. P.
(2003).
Remarkable synteny conservation of melanocortin receptors in chicken, human, and other vertebrates. Genomics.
81(5), 504-509.
-
Raudsepp, T., Lear, T. L., & Chowdhary, B. P.
(2002).
Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann's mountain zebra. Cytogenetic and Genome Research.
96(1-4), 206-209.
-
Raudsepp, T., Houck, M. L., O'Brien, P. C., Ferguson-Smith, M. A., Ryder, O. A., & Chowdhary, B. P.
(2002).
Cytogenetic analysis of California condor (Gymnogyps californianus) chromosomes: comparison with chicken (Gallus gallus) macrochromosomes. Cytogenetic and Genome Research.
98(1), 54-60.
-
Santani, A., Raudsepp, T., & Chowdhary, B. P.
(2002).
Interstitial telomeric sites and NORs in Hartmann's zebra (Equus zebra hartmannae) chromosomes. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
10(7), 527-534.
-
Raudsepp, T., Kata, S. R., Piumi, F., Swinburne, J., Womack, J. E., Skow, L. C., & Chowdhary, B. P.
(2002).
Conservation of gene order between horse and human X chromosomes as evidenced through radiation hybrid mapping. Genomics.
79(3), 451-457.
-
Chowdhary, B. P., Raudsepp, T., Honeycutt, D., Owens, E. K., Piumi, F., Gurin, G., ... Skow, L. C.
(2002).
Construction of a 5000(rad) whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11. MAMMALIAN GENOME.
13(2), 89-94.
-
Giese, A., Jude, R., Kuiper, H., Raudsepp, T., Piumi, F., Schambony, A., ... Leeb, T.
(2002).
Molecular characterization of the equine testis-specific protein 1 (TPX1) and acidic epididymal glycoprotein 2 (AEG2) genes encoding members of the cysteine-rich secretory protein (CRISP) family. Gene.
299(1-2), 101-109.
-
Raudsepp, T., Mariat, D., Gurin, G., & Chowdhary, B. P.
(2001).
Comparative FISH mapping of 32 loci reveals new homologous regions between donkey and horse karyotypes. 94(3-4), 180-185.
-
Mariat, D., Oustry-Vaiman, A., Cribiu, E. P., Raudsepp, T., Chowdhary, B. P., & Gurin, G.
(2001).
Isolation, characterization and FISH assignments of horse BAC clones containing type I and II markers. 92(1-2), 144-148.
-
Chowdhary, B. P., & Raudsepp, T.
(2001).
Chromosome painting in farm, pet and wild animal species. 23(1-3), 37-55.
-
Svensson, A. C., Raudsepp, T., Larsson, C., Di Cristofano, A., Chowdhary, B., La Mantia, G., Rask, L., & Andersson, G.
(2001).
Chromosomal distribution, localization and expression of the human endogenous retrovirus ERV9. Cytogenetic and Genome Research.
92(1-2), 89-96.
-
Raudsepp, T., & Chowdhary, B. P.
(2001).
Correspondence of human chromosomes 9, 12, 15, 16, 19 and 20 with donkey chromosomes refines homology between horse and donkey karyotypes. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
9(8), 623-629.
-
Raudsepp, T., Christensen, K., & Chowdhar, B. P.
(2000).
Cytogenetics of donkey chromosomes: nomenclature proposal based on GTG-banded chromosomes and depiction of NORs and telomeric sites. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
8(8), 659-670.
-
Chowdhary, B. P., & Raudsepp, T.
(2000).
HSA4 and GGA4: remarkable conservation despite 300-Myr divergence. Genomics.
64(1), 102-105.
-
Raudsepp, T., & Chowdhary, B. P.
(1999).
Construction of chromosome-specific paints for meta- and submetacentric autosomes and the sex chromosomes in the horse and their use to detect homologous chromosomal segments in the donkey. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
7(2), 103-114.
-
Raudsepp, T., Kijas, J., Godard, S., Gurin, G., Andersson, L., & Chowdhary, B. P.
(1999).
Comparison of horse chromosome 3 with donkey and human chromosomes by cross-species painting and heterologous FISH mapping. MAMMALIAN GENOME.
10(3), 277-282.
-
Gfvels, M., Olin, M., Chowdhary, B. P., Raudsepp, T., Andersson, U., Persson, B., ... Eggertsen, G.
(1999).
Structure and chromosomal assignment of the sterol 12alpha-hydroxylase gene (CYP8B1) in human and mouse: eukaryotic cytochrome P-450 gene devoid of introns. Genomics.
56(2), 184-196.
-
Chaudhary, R., Kijas, J., Raudsepp, T., Guan, X. Y., Zhang, H., & Chowdhary, B. P.
(1998).
Microdissection of pig chromosomes: dissection of whole chromosomes, arms and bands for construction of paints and libraries. Hereditas.
128(3), 265-271.
-
Soldatov, N. M., Raudsepp, T., & Chowdhary, B. P.
(1998).
Repetitive exon 45/46-related sequences of human Ca2+ channel alpha1C subunit gene. Human Heredity: international journal of human and medical genetics.
48(5), 241-244.
-
Fridolfsson, A. K., Cheng, H., Copeland, N. G., Jenkins, N. A., Liu, H. C., Raudsepp, T., ... Ellegren, H.
(1998).
Evolution of the avian sex chromosomes from an ancestral pair of autosomes. Proceedings of the National Academy of Sciences of the United States of America.
95(14), 8147-8152.
-
Chowdhary, B. P., Raudsepp, T., Frnicke, L., & Scherthan, H.
(1998).
Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH. Genome Research.
8(6), 577-589.
-
Chaudhary, R., Raudsepp, T., Guan, X. Y., Zhang, H., & Chowdhary, B. P.
(1998).
Zoo-FISH with microdissected arm specific paints for HSA2, 5, 6, 16, and 19 refines known homology with pig and horse chromosomes. MAMMALIAN GENOME.
9(1), 44-49.
-
Bowling, A. T., Breen, M., Chowdhary, B. P., Hirota, K., Lear, T., Millon, L. V., ... Stranzinger, G.
(1997).
International system for cytogenetic nomenclature of the domestic horse. Report of the Third International Committee for the Standardization of the domestic horse karyotype, Davis, CA, USA, 1996. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
5(7), 433-443.
-
Primmer, C. R., Raudsepp, T., Chowdhary, B. P., Mller, A. P., & Ellegren, H.
(1997).
Low frequency of microsatellites in the avian genome. Genome Research.
7(5), 471-482.
-
Raudsepp, T., Otte, K., Rozell, B., & Chowdhary, B. P.
(1997).
FISH mapping of the IGF2 gene in horse and donkey-detection of homoeology with HSA11. MAMMALIAN GENOME.
8(8), 569-572.
-
Raudsepp, T., Frnicke, L., Scherthan, H., Gustavsson, I., & Chowdhary, B. P.
(1996).
Zoo-FISH delineates conserved chromosomal segments in horse and man. 4(3), 218-225.
-
Raudsepp, T., Finno, C. J., Bellone, R. R., & Petersen, J. L.
Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era. Animal Genetics.
50(6), 569-597.
-
Castaneda, C., Juras, R., Kjllerstrm, J., Hernandez Aviles, C., Teague, S. R., Love, C. C., ... Raudsepp, T.
(2021).
Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire. 52(6), 813-823.
-
chapter
-
Raudsepp, T.
(2014).
Cytogenetics and Infertility. Llama and Alpaca Care.
(pp. 243-249).
Elsevier.
-
Raudsepp, T., Das, P. J., & Chowdhary, B. P.
(2013).
Genomics of Reproduction and Fertility. Equine Genomics.
(pp. 199-215).
Wiley.
-
Penedo, M., & Raudsepp, T.
(2013).
Molecular Genetic Testing and Karyotyping in the Horse. Equine Genomics.
(pp. 241-254).
Wiley.
-
Raudsepp, T., & Chowdhary, B. P.
(2013).
Physical and Comparative Maps. Equine Genomics.
(pp. 49-71).
Wiley.
-
Raudsepp, T., Paria, N., & Chowdhary, B. P.
(2013).
The YChromosome. Equine Genomics.
(pp. 73-92).
Wiley.
-
Raudsepp, T., & Chowdhary, B. P.
(2011).
Cytogenetics and Chromosome Maps. GENETICS OF THE PIG, 2ND EDITION.
(pp. 134-178).
CABI Publishing.
-
Raudsepp, T., & Chowdhary, B. P.
(2008).
FISH for mapping single copy genes. Methods in molecular biology (Clifton, N.J.).
Phylogenomics.
(pp. 31-49).
Springer Nature.
-
Chowdhary, B. P., & Raudsepp, T.
(2006).
The horse genome. Genome dynamics.
Vertebrate Genomes.
(pp. 97-110).
Karger Publishers.
-
Chowdhary, B. P., & Raudsepp, T.
(2005).
Mapping genomes at the chromosome level. Mammalian genomics.
(pp. 23-65).
CABI Publishing.
-
Raudsepp, T.
(2014).
Cytogenetics and Infertility. Llama and Alpaca Care.
(pp. 243-249).
Elsevier.
-
conference paper
-
Rose, B., Smart, H., Wathes, C., Verheyen, K., Ghosh, S., Raudsepp, T., & de Mestre, A.
(2017).
PROFILING OF STRUCTURAL GENOMIC VARIANTS IN PLACENTAE FROM MARES THAT SUFFER EARLY PREGNANCY LOSS. Placenta.
269-269.
-
Duquesne, J. J., Orlando, L., Schubert, M., Ghosh, S., Raudsepp, T., Stout, T. A., & Chowdhary, B. P.
(2016).
A comprehensive gene catalog of the horse Y chromosome. Journal of Animal Science.
182-183.
-
Ghosh, S., Das, P. J., Qu, Z., Fang, E., Arnold, C., Adelson, D. L., Chowdhary, B. P., & Raudsepp, T.
(2012).
Array CGH Studies in Equine Disorders of Sexual Development - SRY-Positive Sex Reversal and Cryptorchidism. Cytogenetic and Genome Research.
329-330.
-
Avila, F., Das, P. J., Kutzler, M., Owens, E., Perelman, P., & Raudsepp, T.
(2012).
Development and Application of Molecular Tools for Camelid Cytogenetics. Cytogenetic and Genome Research.
328-328.
-
Das, P. J., Mishra, D. K., Avila, F., Johnson, G., Chowdhary, B. P., & Raudsepp, T.
(2012).
Identification and Expression Analysis of the Pig Pseudoautosomal Region Using Molecular Cytogenetics Approach. Cytogenetic and Genome Research.
329-329.
-
Santani, A. B., Raudsepp, T., Skow, L. C., & Chowdhary, B. P.
(2003).
Clusters of overlapping BACs on the euchromatic region of the equine Y. Cytogenetic and Genome Research.
360-360.
-
Lee, E. J., Raudsepp, T., Skow, L., & Chowdhary, B. P.
(2003).
Towards generating a 1-Mb resolution map of the horse X chromosome. Cytogenetic and Genome Research.
357-358.
-
Raudsepp, T., Santani, A., Skow, L. C., & Chowdhary, B. P.
(2003).
The first physical map - RH and FISH - of the equine Y chromosome. Cytogenetic and Genome Research.
359-359.
-
Bowling, A. T., Breen, M., Chowdhary, B. P., Hirota, K., Lear, T., Millon, L. V., ... Stranzinger, G.
(1997).
Report of the Third International Committee for the standardization of the domestic horse Karyotype, Davis, CA, USA, 1996. International system for cytogenetic nomenclature of the domestic horse. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology.
433-443.
-
Rose, B., Smart, H., Wathes, C., Verheyen, K., Ghosh, S., Raudsepp, T., & de Mestre, A.
(2017).
PROFILING OF STRUCTURAL GENOMIC VARIANTS IN PLACENTAE FROM MARES THAT SUFFER EARLY PREGNANCY LOSS. Placenta.
269-269.
Research
principal investigator on
- Refining the sequence and annotation of complex regions in the horse sex chromosomes to enhance knowledge of functionally important genes awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2019 - 2022
- Sequencing and Functional Analysis of the Horse Y Chromosome awarded by United States Department of Agriculture - (Washington D.C., District of Columbia, United States) 2012 - 2017
Teaching
teaching activities
- BICH491 Hnr-research Instructor
- BIMS320 Biomedical Genetics Instructor
- BIMS320 Hnr-biomedical Genetics Instructor
- BIMS485 Directed Studies Instructor
- BIMS491 Research Instructor
- BIMS491 Research Instructor
- GENE320 Biomedical Genetics Instructor
- GENE320 Hnr-biomedical Genetics Instructor
- GENE491 Hnr-research Instructor
- GENE691 Research Instructor
- VIBS285 Directed Studies Instructor
- VIBS485 Directed Studies Instructor
- VIBS685 Directed Studies Instructor
- VIBS691 Research Instructor
- VIBS691 Research Instructor
Works By Students
chaired theses and dissertations
-
Fagundes De Avila, Felipe (2014-08). Comparative Mapping of the Alpaca Genome.
-
Fang, Erica (2012-02). Molecular Studies in Horses with SRY-Positive XY Sex Reversal.
-
Ghosh, Sharmila (2014-07). Study of Genomic Copy Number Variation in Equine Health and Disease.
-
Paria, Nandina (2012-02). Discovery of Candidate Genes for Stallion Fertility from the Horse Y Chromosome.
Background
education and training
- B.S. in Genetics/Cytology, University of Tartu - (Tartu, Estonia)
- Ph.D. in Molecular Genetics, Swedish University of Agricultural Sciences - (Uppsala, Sweden) 1999
- M.Sc. in Genetics/Cytology, University of Tartu - (Tartu, Estonia) 1982
awards and honors
Contact
first name
- Terje
has last name
- Raudsepp
mailing address
-
Texas A&M University
Veterinary Integrative Biosciences
4458 TAMU
College Station, TX 77843-4458
USA
Other
In the News
- terje@tamu.edu