selected publications academic article Gleich, S. J., Hu, S. K., Krinos, A. I., & Caron, D. A. (2024). Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth. Environmental Microbiology. 26(1), e16556. Hu, S. K., Smith, A. R., Anderson, R. E., Sylva, S. P., Setzer, M., Steadmon, M., ... Huber, J. A. (2023). Globally-distributed microbial eukaryotes exhibit endemism at deep-sea hydrothermal vents. Molecular Ecology. 32(23), 6580-6598. Alexander, H., Hu, S. K., Krinos, A. I., Pachiadaki, M., Tully, B. J., Neely, C. J., & Reiter, T. (2023). Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton. mBio. 14(6), e0167623. Ollison, G. A., Hu, S. K., Hopper, J. V., Stewart, B. P., Beatty, J. L., & Caron, D. A. (2023). Physiology governing diatom vs. dinoflagellate bloom and decline in coastal Santa Monica Bay. Frontiers in Microbiology. 14, 1287326. Ollison, G. A., Hu, S. K., Hopper, J. V., Stewart, B. P., Smith, J., Beatty, J. L., Rink, L. K., & Caron, D. A. (2022). Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight). Environmental Microbiology. 24(12), 6033-6051. Hammond, S. W., Lodolo, L., Hu, S. K., & Pasulka, A. L. (2022). Methodological 'lenses' influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem. Environmental Microbiology Reports. 14(6), 897-906. Hu, S. K., Herrera, E. L., Smith, A. R., Pachiadaki, M. G., Edgcomb, V. P., Sylva, S. P., ... Huber, J. A. (2021). Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents. Proceedings of the National Academy of Sciences of the United States of America. 118(29), e2102674118. Ollison, G. A., Hu, S. K., Mesrop, L. Y., DeLong, E. F., & Caron, D. A. (2021). Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre. Deep-Sea Research Part I: Oceanographic Research Papers. 170, 103494-103494. Coesel, S. N., Durham, B. P., Groussman, R. D., Hu, S. K., Caron, D. A., Morales, R. L., Ribalet, F., & Armbrust, E. V. (2021). Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities. Proceedings of the National Academy of Sciences of the United States of America. 118(6), e2011038118. Coenen, A. R., Hu, S. K., Luo, E., Muratore, D., & Weitz, J. S. (2020). A Primer for Microbiome Time-Series Analysis. Frontiers in Genetics. 11, 310. Pasulka, A., Hu, S. K., Countway, P. D., Coyne, K. J., Cary, S. C., Heidelberg, K. B., & Caron, D. A. (2019). SSU-rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent. Journal of Eukaryotic Microbiology. 66(4), 637-653. Boeuf, D., Edwards, B. R., Eppley, J. M., Hu, S. K., Poff, K. E., Romano, A. E., ... DeLong, E. F. (2019). Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. Proceedings of the National Academy of Sciences of the United States of America. 116(24), 11824-11832. Caron, D. A., & Hu, S. K. (2019). Are We Overestimating Protistan Diversity in Nature?. TRENDS IN MICROBIOLOGY. 27(3), 197-205. Hu, S. K., Liu, Z., Alexander, H., Campbell, V., Connell, P. E., Dyhrman, S. T., Heidelberg, K. B., & Caron, D. A. (2018). Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. 20(8), 2865-2879. Liu, Z., Hu, S. K., Campbell, V., Tatters, A. O., Heidelberg, K. B., & Caron, D. A. (2017). Single-cell transcriptomics of small microbial eukaryotes: limitations and potential. The ISME Journal. 11(5), 1282-1285. Hu, S. K., Campbell, V., Connell, P., Gellene, A. G., Liu, Z., Terrado, R., & Caron, D. A. (2016). Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific. FEMS MICROBIOLOGY ECOLOGY. 92(4), fiw050-fiw050. Hu, S. K., Liu, Z., Lie, A., Countway, P. D., Kim, D. Y., Jones, A. C., ... Caron, D. A. (2015). Estimating Protistan Diversity Using High-Throughput Sequencing. Journal of Eukaryotic Microbiology. 62(5), 688-693. Lie, A., Liu, Z., Hu, S. K., Jones, A. C., Kim, D. Y., Countway, P. D., ... Caron, D. A. (2014). Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes. Applied and Environmental Microbiology. 80(14), 4363-4373. institutional repository document Hu, S. K., Anderson, R. E., Pachiadaki, M. G., Edgcomb, V. P., Serres, M. H., Sylva, S. P., ... Huber, J. A. (2023). Microbial eukaryotic predation pressure and biomass at deep-sea hydrothermal vents: Implications for deep-sea carbon cycling Krinos, A. I., Brisbin, M. M., Hu, S. K., Cohen, N. R., Rynearson, T. A., Follows, M. J., Schulz, F., & Alexander, H. (2023). Missing microbial eukaryotes and misleading meta-omic conclusions Neely, C. J., Hu, S. K., Alexander, H., & Tully, B. J. (2021). The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity Alexander, H., Hu, S. K., Krinos, A. I., Pachiadaki, M., Tully, B. J., Neely, C. J., & Reiter, T. (2021). Eukaryotic genomes from a global metagenomic dataset illuminate trophic modes and biogeography of ocean plankton Beckett, S. J., Demory, D., Coenen, A. R., Casey, J. R., Dugenne, M., Follett, C. L., ... Weitz, J. S. (2021). Disentangling top-down drivers of mortality underlying diel population dynamics ofProchlorococcusin the North Pacific Subtropical Gyre Hu, S. K., Herrera, E. L., Smith, A. R., Pachiadaki, M. G., Edgcomb, V. P., Sylva, S. P., ... Huber, J. A. (2021). Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents
teaching activities OCNG251 Oceanography Instructor OCNG491 Research Instructor OCNG689 Sptp: Sci Writing In Oceanog Instructor OCNG691 Research Instructor