Spalink, Daniel Assistant Professor

academic article

• Elliott, T. L., Spalink, D., Larridon, I., Zuntini, A. R., Escudero, M., Hackel, J., ... Muasya, A. M. (2023). Global analysis of Poales diversification - parallel evolution in space and time into open and closed habitats. New Phytologist. 
  
• Larridon, I., Zuntini, A. R., Leveille-Bourret, E., Barrett, R. L., Starr, J. R., Muasya, A. M., ... Baker, W. J. (2021). A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution.  59(4), 852-895.
  
• Benitez-Benitez, C., Martin-Bravo, S., Bjora, C. S., Gebauer, S., Hipp, A. L., Hoffmann, M. H., ... Jimenez-Mejias, P. (2021). Geographical vs. ecological diversification in Carex section Phacocystis (Cyperaceae): Patterns hidden behind a twisted taxonomy. 59(4), 642-667.
  
• Marquez-Corro, J. I., Martin-Bravo, S., Jimenez-Mejias, P., Hipp, A. L., Spalink, D., Naczi, R., ... Escudero, M. (2021). Macroevolutionary insights into sedges (Carex: Cyperaceae): The effects of rapid chromosome number evolution on lineage diversification. 59(4), 776-790.
  
• Zhang, Y., Qian, L., Spalink, D., Sun, L. u., Chen, J., & Sun, H. (2021). Spatial phylogenetics of two topographic extremes of the Hengduan Mountains in southwestern China and its implications for biodiversity conservation. Plant Diversity.  43(3), 181-191.
  
• Givnish, T. J., Kriebel, R., Zaborsky, J. G., Rose, J. P., Spalink, D., Waller, D. M., Cameron, K. M., & Sytsma, K. J. (2020). Adaptive associations among life history, reproductive traits, environment, and origin in the Wisconsin angiosperm flora. AMERICAN JOURNAL OF BOTANY.  107(12), 1677-1692.
  
• Escudero, M., Nieto Feliner, G., Pokorny, L., Spalink, D., & Viruel, J. (2020). Editorial: Phylogenomic Approaches to Deal With Particularly Challenging Plant Lineages. 11, 591762.
  
• Spalink, D., MacKay, R., & Sytsma, K. J. (2019). Phylogeography, population genetics and distribution modelling reveal vulnerability of Scirpus longii (Cyperaceae) and the Atlantic Coastal Plain Flora to climate change. Molecular Ecology.  28(8), 2046-2061.
  
• Martin-Bravo, S., Jimenez-Mejias, P., Villaverde, T., Escudero, M., Hahn, M., Spalink, D., ... Starr, J. R. (2019). A tale of worldwide success: Behind the scenes of Carex (Cyperaceae) biogeography and diversification. Journal of Systematics and Evolution.  57(6), 695-718.
  
• Abdelaal, H., Spalink, D., Amer, A., Steinberg, H., Hashish, E. A., Nasr, E. A., & Talaat, A. M. (2019). Genomic Polymorphism Associated with the Emergence of Virulent Isolates of Mycobacterium bovis in the Nile Delta. Scientific Reports.  9(1), 11657.
  
• Alyamani, E. J., Marcus, S. A., Ramirez-Busby, S. M., Hansen, C., Rashid, J., El-Kholy, A., ... Talaat, A. M. (2019). Genomic analysis of the emergence of drug-resistant strains of Mycobacterium tuberculosis in the Middle East. Scientific Reports.  9(1), 4474.
  
• Mrquez-Corro, J. I., Martn-Bravo, S., Spalink, D., Luceo, M., & Escudero, M. (2019). Inferring hypothesis-based transitions in clade-specific models of chromosome number evolution in sedges (Cyperaceae). Molecular Phylogenetics and Evolution.  135, 203-209.
  
• Alyamani, E. J., Marcus, S. A., Ramirez-Busby, S. M., Hansen, C., Rashid, J., El-Kholy, A., ... Talaat, A. M. (2019). Publisher Correction: Genomic analysis of the emergence of drug-resistant strains of Mycobacterium tuberculosis in the Middle East. Scientific Reports.  9(1), 20268.
  
• Givnish, T. J., Zuluaga, A., Spalink, D., Soto Gomez, M., Lam, V., Saarela, J. M., ... An, C. (2018). Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. AMERICAN JOURNAL OF BOTANY.  105(11), 1888-1910.
  
• Spalink, D., Kriebel, R., Li, P., Pace, M. C., Drew, B. T., Zaborsky, J. G., ... Sytsma, K. J. (2018). Spatial phylogenetics reveals evolutionary constraints on the assembly of a large regional flora. AMERICAN JOURNAL OF BOTANY.  105(11), 1938-1950.
  
• Spalink, D., Pender, J., Escudero, M., Hipp, A. L., Roalson, E. H., Starr, J. R., ... Sytsma, K. J. (2018). The spatial structure of phylogenetic and functional diversity in the United States and Canada: An example using the sedge family (Cyperaceae). Journal of Systematics and Evolution.  56(5), 449-465.
  
• Kitanovic, S., Orr, T. J., Spalink, D., Cocke, G. B., Schramm, K., Wilderman, P. R., Halpert, J. R., & Dearing, M. D. (2018). Role of cytochrome P450 2B sequence variation and gene copy number in facilitating dietary specialization in mammalian herbivores. Molecular Ecology.  27(3), 723-736.
  
• Spalink, D., Stoffel, K., Walden, G. K., Hulse-Kemp, A. M., Hill, T. A., Van Deynze, A., & Bohs, L. (2018). Comparative transcriptomics and genomic patterns of discordance in Capsiceae (Solanaceae). Molecular Phylogenetics and Evolution.  126, 293-302.
  
• Givnish, T. J., Zuluaga, A., Marques, I., Lam, V., Gomez, M. S., Iles, W., ... Graham, S. W. (2016). Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica. Cladistics.  32(6), 581-605.
  
• Spalink, D., Drew, B. T., Pace, M. C., Zaborsky, J. G., Starr, J. R., Cameron, K. M., Givnish, T. J., & Sytsma, K. J. (2016). Biogeography of the cosmopolitan sedges (Cyperaceae) and the area-richness correlation in plants. Journal of Biogeography.  43(10), 1893-1904.
  
• Kartzinel, R. Y., Spalink, D., Waller, D. M., & Givnish, T. J. (2016). Divergence and isolation of cryptic sympatric taxa within the annual legume Amphicarpaea bracteata. Ecology and Evolution.  6(10), 3367-3379.
  
• Spalink, D., Drew, B. T., Pace, M. C., Zaborsky, J. G., Li, P., Cameron, K. M., Givnish, T. J., & Sytsma, K. J. (2016). Evolution of geographical place and niche space: Patterns of diversification in the North American sedge (Cyperaceae) flora. Molecular Phylogenetics and Evolution.  95, 183-195.
  
• Berger, B. A., Kriebel, R., Spalink, D., & Sytsma, K. J. (2016). Divergence times, historical biogeography, and shifts in speciation rates of Myrtales. Molecular Phylogenetics and Evolution.  95, 116-136.
  
• Givnish, T. J., Spalink, D., Ames, M., Lyon, S. P., Hunter, S. J., Zuluaga, A., ... Cameron, K. M. (2016). Orchid historical biogeography, diversification, Antarctica and the paradox of orchid dispersal. Journal of Biogeography.  43(10), 1905-1916.
  
• Waterway, M. J., Bruhl, J. J., Wilson, K. L., Ford, B. A., Starr, J. R., Jin, X., ... Spalink, D. (2015). Making Carex monophyletic (Cyperaceae, tribe Cariceae): a new broader circumscription. 179(1), 1-42.
  
• Givnish, T. J., Spalink, D., Ames, M., Lyon, S. P., Hunter, S. J., Zuluaga, A., ... Cameron, K. M. (2015). Orchid phylogenomics and multiple drivers of their extraordinary diversification. Proceedings of the Royal Society of London. Biological Sciences.  282(1814), 171-180.
  
• Sytsma, K. J., Spalink, D., & Berger, B. (2014). Calibrated chronograms, fossils, outgroup relationships, and root priors: re-examining the historical biogeography of Geraniales. Biological Journal of the Linnean Society.  113(1), 29-49.
  
• Leveille-Bourret, E., Gilmour, C. N., Starr, J. R., Naczi, R., Spalink, D., & Sytsma, K. J. (2014). Searching for the sister to sedges (Carex): resolving relationships in the Cariceae-Dulichieae-Scirpeae clade (Cyperaceae). BOTANICAL JOURNAL OF THE LINNEAN SOCIETY.  176(1), 1-21.