Draft genome data of Prunus avium cv 'Stella'. Academic Article

abstract

• Prunus avium cv. 'Stella' total cellular DNA was isolated from emerging leaf tissue and sequenced using Roche 454 GS FLX Titanium, and Illumina HiSeq 2000 High Throughput Sequencing (HTS) technologies. Sequence data were filtered and trimmed to retain nucleotides corresponding to Phred score 30, and assembled with CLC Genomics Workbench v.6.0.1. A total of 107,531 contigs were assembled with 185 scaffolds with a maximum length of 132,753 nucleotides and an N50 value of 4,601. The average depth of coverage was 135.87 nucleotides with a median depth of coverage equal to 31.50 nucleotides. The draft 'Stella' genome presented here covers 77.8% of the estimated 352.9Mb P. avium genome and is expected to facilitate genetics and genomics research focused on identifying genes and quantitative trait loci (QTL) underlying important agronomic and consumer traits.

authors

• Dhingra, Amit

published proceedings

• Data Brief

author list (cited authors)

• Sharpe, R. M., Killian, B., Koepke, T., Ghogare, R., Oraguzie, N., Whiting, M., ... Dhingra, A.

citation count

• 1

complete list of authors

• Sharpe, Richard M||Killian, Benjamin||Koepke, Tyson||Ghogare, Rishikesh||Oraguzie, Nnadozie||Whiting, Matthew||Meisel, Lee A||Silva, Herman||Dhingra, Amit

publication date

• December 2022

publisher

• Elsevier  Publisher

published in

• Data in Brief  Journal

keywords

• Genome
• High-throughput Sequencing
• Prunus Avium
• Rosaceae

PubMed Central ID

• 36164303

Digital Object Identifier (DOI)

• 10.1016/j.dib.2022.108611

start page

• 108611

end page

• 108611

volume

• 45

URL

• http://dx.doi.org/10.1016/j.dib.2022.108611