An automated system for interrogating the evolution of microbial endosymbiosis. Academic Article uri icon


  • Inter-kingdom endosymbiotic interactions between bacteria and eukaryotic cells are critical to human health and disease. However, the molecular mechanisms that drive the emergence of endosymbiosis remain obscure. Here, we describe the development of a microfluidic system, named SEER (System for the Evolution of Endosymbiotic Relationships), that automates the evolutionary selection of bacteria with enhanced intracellular survival and persistence within host cells, hallmarks of endosymbiosis. Using this system, we show that a laboratory strain of Escherichia coli that initially possessed limited abilities to survive within host cells, when subjected to SEER selection, rapidly evolved to display a 55-fold enhancement in intracellular survival. Notably, molecular dissection of the evolved strains revealed that a single-point mutation in a flexible loop of CpxR, a gene regulator that controls bacterial stress responses, substantially contributed to this intracellular survival. Taken together, these results establish SEER as the first microfluidic system for investigating the evolution of endosymbiosis, show the importance of CpxR in endosymbiosis, and set the stage for evolving bespoke inter-kingdom endosymbiotic systems with novel or emergent properties.

published proceedings

  • Lab Chip

altmetric score

  • 3.75

author list (cited authors)

  • Huang, C., Guo, F., Wang, H., Olivares, J., Dalton Iii, J., Belyanina, O., ... de Figueiredo, P.

citation count

  • 0

complete list of authors

  • Huang, Can||Guo, Fengguang||Wang, Han||Olivares, Jasmine||Dalton Iii, James||Belyanina, Olga||Wattam, Alice R||Cucinell, Clark A||Dickerman, Allan W||Qin, Qing-Ming||Han, Arum||de Figueiredo, Paul

publication date

  • February 2023