Tree House Explorer: A Novel Genome Browser for Phylogenomics. Academic Article

abstract

• Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis, with continuous sliding window comparisons to gene annotations (GFF/GTF), recombination rates, and other user-specified, highly customizable feature annotations. THEx provides a new platform for interactive phylogenomic data visualization to analyze and interpret the diverse evolutionary histories woven throughout genomes. Hosted on Conda, THEx integrates seamlessly into new or pre-existing workflows.

authors

• Murphy, William

published proceedings

• Mol Biol Evol

altmetric score

• 4.5

author list (cited authors)

• Harris, A. J., Foley, N. M., Williams, T. L., & Murphy, W. J.

citation count

• 2

complete list of authors

• Harris, Andrew J||Foley, Nicole M||Williams, Tiffani L||Murphy, William J

publication date

• January 2022

publisher

• Oxford University Press (OUP)  Publisher

published in

• Molecular Biology and Evolution (MBE)  Journal

keywords

• Biotechnology
• Genetics
• Human Genome

PubMed Central ID

• 35700217

Digital Object Identifier (DOI)

• 10.1093/molbev/msac130

start page

• msac130

volume

• 39

issue

• 6

URL

• http://dx.doi.org/10.1093/molbev/msac130