A Bayesian Approach to Determine the Composition of Heterogeneous Cancer Tissue
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2017 Copyright held by the owner/author(s). Cancer Tissue Heterogeneity is an important consideration in cancer research as it can give insights into the causes and progression of cancer. It is known to play a significant role in cancer cell survival, growth and metastasis. Determining the compositional breakup of a heterogeneous cancer tissue can also help address the therapeutic challenges posed by heterogeneity. This necessitates a low cost, scalable algorithm to address the challenge of accurate estimation of the composition of a heterogeneous cancer tissue. In this paper, we propose an algorithm to tackle this problem by utilizing the data of accurate, but high cost, single cell line cell-by-cell observation methods in low cost ensemble observation method for heterogeneous cancer cell mixtures to obtain their composition in a Bayesian framework. The algorithm is analyzed and validated using synthetic data and experimental data obtained from mixtures of cancer cell lines.
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Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics