Empirical modeling of T cell activation predicts interplay of host cytokines and bacterial indole Academic Article uri icon


  • Adoptive transfer of anti-inflammatory FOXP3+ Tregs has gained attention as a new therapeutic strategy for auto-inflammatory disorders such as Inflammatory Bowel Disease. The isolated cells are conditioned in vitro to obtain a sufficient number of anti-inflammatory FOXP3+ Tregs that can be reintroduced into the patient to potentially reduce the pathologic inflammatory response. Previous evidence suggests that microbiota metabolites can potentially condition cells during the in vitro expansion/differentiation step. However, the number of combinations of cytokines and metabolites that can be varied is large, preventing a purely experimental investigation which would determine optimal cell therapeutic outcomes. To address this problem, a combined experimental and modeling approached is investigated here: an artificial neural network model was trained to predict the steady-state T cell population phenotype after differentiation with a variety of host cytokines and the microbial metabolite indole. This artificial neural network model was able to both reliably predict the phenotype of these T cell populations and also uncover unexpected conditions for optimal Treg differentiation that were subsequently verified experimentally. Biotechnol. Bioeng. 2017;114: 2660-2667. © 2017 Wiley Periodicals, Inc.

altmetric score

  • 5.85

author list (cited authors)

  • Steinmeyer, S., Howsmon, D. P., Alaniz, R. C., Hahn, J., & Jayaraman, A.

citation count

  • 7

complete list of authors

  • Steinmeyer, Shelby||Howsmon, Daniel P||Alaniz, Robert C||Hahn, Juergen||Jayaraman, Arul

publication date

  • July 2017