PGEToolbox: A Matlab toolbox for population genetics and evolution.

abstract

• Assessing genetic diversity within populations is vital for understanding the nature of evolutionary processes at the molecular level. PGEToolbox is a Matlab-based open-sourced software package for data analysis in population genetics. The main features of this software are as follows: 1) capability for handling both DNA sequence polymorphisms and single nucleotide polymorphisms (SNPs), which include genotype and haplotype data; 2) exhaustive population genetic analyses and neutrality tests based on the coalescent theory; 3) extendibility and scalability for complex and large genome-wide datasets; 4) simple yet effective graphic user interfaces and sophisticated visualization of data and results. For academic uses, PGEToolbox is available free of charge at http://bioinformatics.org/pgetoolbox.

authors

• Cai, James

published proceedings

• J Hered

altmetric score

• 3

author list (cited authors)

• Cai, J. J.

citation count

• 21

complete list of authors

• Cai, James J

publication date

• August 2008

publisher

• Oxford University Press (OUP)  Publisher

keywords

• Animals
• Evolution, Molecular
• Genetics, Population
• Humans
• Polymorphism, Single Nucleotide
• Software

PubMed Central ID

• 18310616

Digital Object Identifier (DOI)

• 10.1093/jhered/esm127

start page

• 438

end page

• 440

volume

• 99

issue

• 4

URL

• http://dx.doi.org/10.1093/jhered/esm127