SBEToolbox: A Matlab Toolbox for Biological Network Analysis. Academic Article

abstract

• We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases.

authors

• Cai, James

published proceedings

• Evol Bioinform Online

altmetric score

• 0.5

author list (cited authors)

• Konganti, K., Wang, G., Yang, E., & Cai, J. J.

citation count

• 41

complete list of authors

• Konganti, Kranti||Wang, Gang||Yang, Ence||Cai, James J

publication date

• January 2013

publisher

• SAGE Publications  Publisher

keywords

• Biological Network
• Matlab Toolbox
• Network Evolution
• Node Centrality

Digital Object Identifier (DOI)

• 10.4137/EBO.S12012

start page

• 355

end page

• 362

volume

• 9

issue

• 9

URL

• http%3A%2F%2Fdx.doi.org%2F10.4137%2Febo.s12012