BMC Bioinformatics
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Overview
publication venue for
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An improved algorithm for flux variability analysis..
23:550.
2022
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The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data..
21:562.
2020
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Compositional zero-inflated network estimation for microbiome data..
21:581.
2020
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Deriving a Boolean dynamics to reveal macrophage activation with in vitro temporal cytokine expression profiles..
20:725.
2019
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Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression..
20:603-603:1.
2019
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Optimal clustering with missing values..
20:321.
2019
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Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)..
20:316.
2019
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Local edge-enhanced active contour for accurate skin lesion border detection..
20:91.
2019
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A statistical method to identify recombination in bacterial genomes based on SNP incompatibility..
19:450-450:1.
2018
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ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models..
19:80.
2018
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A Bayesian approach to determine the composition of heterogeneous cancer tissue..
19:90.
2018
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Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)..
19:69.
2018
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Simulating variance heterogeneity in quantitative genome wide association studies..
19:72.
2018
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Bayesian graphical models for computational network biology..
19:63.
2018
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Phage spanins: diversity, topological dynamics and gene convergence..
19:326.
2018
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Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors..
18:552.
2017
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Reliable Biomarker discovery from Metagenomic data via RegLRSD algorithm..
18:328-328.
2017
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Towards targeted combinatorial therapy design for the treatment of castration-resistant prostate cancer..
18:134.
2017
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An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data..
18:94.
2017
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BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems..
18:519.
2017
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CUFID-query: accurate network querying through random walk based network flow estimation..
18:500.
2017
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Effective computational detection of piRNAs using n-gram models and support vector machine..
18:517.
2017
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Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)..
18:159.
2017
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Abrupt skin lesion border cutoff measurement for malignancy detection in dermoscopy images..
17:367.
2016
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Successful classification of cocaine dependence using brain imaging: a generalizable machine learning approach..
17:357.
2016
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Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model..
17:395.
2016
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Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network..
17:351.
2016
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Computational identification of genetic subnetwork modules associated with maize defense response to Fusarium verticillioides..
16 Suppl 13:S12.
2015
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Dynamical modeling of uncertain interaction-based genomic networks..
16 Suppl 13:S3.
2015
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Efficient experimental design for uncertainty reduction in gene regulatory networks..
16 Suppl 13:S2.
2015
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Density-based parallel skin lesion border detection with webCL..
16 Suppl 13:S5.
2015
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Deep convolutional neural networks for annotating gene expression patterns in the mouse brain..
16:147.
2015
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Erratum to: Efficient experimental design for uncertainty reduction in gene regulatory networks..
16:410.
2015
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MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification..
15:401.
2014
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Automated identification of cell-type-specific genes in the mouse brain by image computing of expression patterns..
15:209.
2014
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A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis..
14:372.
2013
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Image-level and group-level models for Drosophila gene expression pattern annotation..
14:350.
2013
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A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data..
14:303-303.
2013
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Modeling the next generation sequencing sample processing pipeline for the purposes of classification..
14:307.
2013
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Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering..
14:222.
2013
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Normalization and missing value imputation for label-free LC-MS analysis..
13 Suppl 16:S5.
2012
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Integration of shot-gun proteomics and bioinformatics analysis to explore plant hormone responses..
13 Suppl 15:S8.
2012
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Guest editors' introduction..
13 Suppl 10:S1.
2012
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Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval..
13:107.
2012
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G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes..
13:253.
2012
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An improved border detection in dermoscopy images for density based clustering..
12 Suppl 10:S12.
2011
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Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores..
12 Suppl 10:S6.
2011
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Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens..
12 Suppl 10:S5.
2011
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Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty..
12 Suppl 10:S9.
2011
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Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction..
12 Suppl 10:S1.
2011
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Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception..
12 Suppl 1:S19.
2011
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HDX-analyzer: a novel package for statistical analysis of protein structure dynamics..
12 Suppl 1:S43.
2011
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Gene set analysis for longitudinal gene expression data..
12:273.
2011
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Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data..
11 Suppl 9:S12.
2010
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Enzyme structure dynamics of xylanase I from Trichoderma longibrachiatum..
11 Suppl 6:S12.
2010
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Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network..
11 Suppl 6:S8.
2010
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BPDA - a Bayesian peptide detection algorithm for mass spectrometry..
11:490.
2010
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Evaluation of fecal mRNA reproducibility via a marginal transformed mixture modeling approach..
11:13-13.
2010
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Automatic identification of angiogenesis in double stained images of liver tissue..
10 Suppl 11:S13.
2009
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Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes.
10.
2009
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Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom..
10 Suppl 11:S3.
2009
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Novel software package for cross-platform transcriptome analysis (CPTRA)..
10 Suppl 11:S16.
2009
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Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
10.
2009
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A bag-of-words approach for Drosophila gene expression pattern annotation..
10:119.
2009
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Ontology driven integration platform for clinical and translational research..
10 Suppl 2:S2.
2009
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Bayesian modeling of ChIP-chip data using latent variables..
10:352.
2009
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Identifying significant temporal variation in time course microarray data without replicates..
10:96.
2009
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STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data..
10:332.
2009
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Sample entropy analysis of cervical neoplasia gene-expression signatures..
10:66.
2009
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Modifying the DPClus algorithm for identifying protein complexes based on new topological structures..
9:398.
2008
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A structural approach for finding functional modules from large biological networks..
9 Suppl 9:S19.
2008
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An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks..
9 Suppl 9:S15.
2008
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Adaptive diffusion kernel learning from biological networks for protein function prediction..
9:162.
2008
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Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements..
9:320.
2008
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Automatic delineation of malignancy in histopathological head and neck slides..
8 Suppl 7:S17.
2007
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PeanutMap: an online genome database for comparative molecular maps of peanut..
7:375.
2006
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Noise-injected neural networks show promise for use on small-sample expression data..
7:274.
2006
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The bovine QTL viewer: a web accessible database of bovine Quantitative Trait Loci..
7:283.
2006
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MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution..
6:64-64.
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Comparative genomic analysis of NAC transcriptional factors to dissect the regulatory mechanisms for cell wall biosynthesis.
2012
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